Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1800 ATGGAGGAGGGCCCACCAGCGAATGACGTCTGCAGTGTATGCCATGGAGGCTTCAACATCCCCTTTCAAGCCAATTGCTCTCATTGGTTCTGCGGGAATTGTATTCTACTTGTTTGGCAGCATGGATCAGCACTTCAGCCATGCAAATGCCCTCTATGCCGTCGTCAGATTACTTTGCTGGTTCCTGCTGGGGCTTCACAACGGCAGTGTAATGATCCTGAAGTTTCTGCGATAGTAGGAAGGGTAGAACGATATAACCGTTTATTTGGTAGATGTGACAGTAGTCTCTTTCAGAGAATGCGAGATCTTCCTTTTCTCCTTCGGAGGTTGTTGCGAGAATTGATGGATCCTCAAAGATCTCTTCCTCTTCTCATCAGGGCACGAGTCTATTTTGCAATGTTAACAAGTATTATCTACATAGTCAGCCCTGTAGACATTATTCCAGAAGGGGTTGTGGGAATCCTAGGTCTTTTGGATGATTTCATTATAGCATTCATCTGTTTCCTCCATATTGCTGCCATTTATCGGTCAGTACTTGTTCATCGTCATGGAGGTCCTTAA 561 0.451 MEEGPPANDVCSVCHGGFNIPFQANCSHWFCGNCILLVWQHGSALQPCKCPLCRRQITLLVPAGASQRQCNDPEVSAIVGRVERYNRLFGRCDSSLFQRMRDLPFLLRRLLRELMDPQRSLPLLIRARVYFAMLTSIIYIVSPVDIIPEGVVGILGLLDDFIIAFICFLHIAAIYRSVLVHRHGGP* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1800 186 ProSitePatterns Zinc finger RING-type signature. 26 35 IPR017907 -
Vvi18g1800 186 ProSiteProfiles Zinc finger RING-type profile. 11 54 IPR001841 -
Vvi18g1800 186 Pfam Protein of unknown function (DUF1232) 132 165 IPR010652 -
Vvi18g1800 186 Pfam Zinc finger, C3HC4 type (RING finger) 11 53 IPR018957 GO:0046872
Vvi18g1800 186 SUPERFAMILY RING/U-box 8 60 - -
Vvi18g1800 186 SMART ring_2 11 53 IPR001841 -
Vvi18g1800 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 100 IPR013083 -
Vvi18g1800 186 PANTHER UNCHARACTERIZED 3 183 IPR038896 GO:0061630
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1800 36 185 C3H Transcription Factor Family AT1G72175 68.667 4.59e-62 187