Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1796 ATGTGTCATTGTTCTCAAATTGAATTTGACAGGCATGAATCCAAACTTATTGAGGAAATTGTTAGAGATATTTGGAATAAATTGGTTGGCACATCTCCAAGCTACATGAAGGGCCTAGTTGGGATGGAGTCCCGCCTAGAGGCCATGGATTCCTTATTATGTATTGGATCACTTGATGTTCGGATGGTAGGAATTTGGGGCATGGCTGGCATAGGGAAGACTACCATTGCTAAAGTTATTTATGAGCGAATCTACACTCAATTTGAAGGTTGTTGCTTTCTTTCAAATGTTAGAGAAGAGTCATACAAACATGGTCTACCTTATTTACAAATGGAACTCCTTTCACAAATTTTAAAGGAAAGGAATCCAAATGCAGGACTTTTTAATAAAGGAATCAATTTTATGAAGGATGTGCTCCACTCTAGGAAGGTCCTTATTATCCTTGATGATGTGGATCAACGAAAACAGTTGGAAGATTTAGCAGGAGACAATAATTGGTTTGGATCGGGAAGTCGAATTATCATAACAACTAGAGATCGACATTTGCTAACTTGTCAAGAAGTGGATGCAATATACGAAGTTAAGGAATTAGACAATGATGAAGCTCTTAAGCTATTTTGTCTGTATGCCTTTAGACATAAGCATGGTACAGAAGATTTTAGGCAGCTATGTGGCCATGCACTAGATTATACTAGTGGCCTCCCGTTAGCCCTTAAAGTCTTGGGTTCTTCTCTATACACAAAAGGCATACATGAATGGAAGAGTGAATTGGACAAACTCAAACAATTCCCCAACAAAGAAGTTCAAAATGTGCTCAAAACAAGTTTTGAAGGGTTAGATGACAATGAACAAAATATATTTCTTGATATTGCATTCTTTTATAAAGGGCATGATAAAGATTTTGTTGGAGACATACTAGATAGTTGTGGTTTCTTCTTTGGCATTGGGATAAGAAATCTTGAAGATAAGTCACTGATAACTATTTCGGAGAATAAGTTGTGCATGCATGATTTATTACAAGAAATGGGTTGGGAAATTGTTAGACAAAAATCTGAAGTACCTGGCGAGCGTAGCAGGTTAAGAGTTCATGAGGATATCAATCATGTACTAACAACAAATACGGGGACTGAAGCAGTTGAAGGCATATTCCTTGATTTGTCTGCATCGAAAGAGTTGAACTTTAGTATTGACGCCTTTACAAAGATGAAGAGATTAAGATTGCTCAAAATCTGTAATGTGCAAATAGATAGAAGCTTGGGATATTTGTCAAAAAAAGAGTTAATTGCCTATACTCATGATGTTTGGATAGAGAGGAATTATTTGTACACTCAAAATAAATTGCACCTATATGAAGATTCCAAATTTCTATCCAACAACTTAAGAGATCTCTATTGGCATGGATACCCTTTGAAGTCCTTTCCATCAAATTTTCATCCAGAGAAGCTTGTTGAGCTAAACATGTGCTTTAGTAGACTTAAACAACCGTGGGAAGGAAAAAAGGGATTTGAGAAGTTGAAATCCATCAAACTTAGCCACTCTCAACATCTAACCAAAATACCAGACTTCTCTGGAGTGCCAAACCTTAGGAGACTAATTCTCAAAGGTTGTACAAGTTTGGTCGAGGTTCACCCATCTATTGGAGCTCTCAAGAAGCTTATTTTCCTGAATTTAGAAGGCTGCAAAAAACTCAAGAGTTTCTCAAGCAGCATCCATATGGAGTCCCTTCAAATTCTTACTCTCTCTGGCTGCTCAAAACTGAAGAAGTTTCCAGAGGTCCAAGGGAATATGGAACATCTACCAAATCTTTCTTTAGAAGGGACTGCTATAAAAGGATTGCCCTTGTCCATTGAAAATCTCACTGGACTTGCTTTGTTAAATCTGAAAGAGTGCAAAAGCCTTGAGTCACTACCCAGAAGCATTTTTAAGTTGAAGTCCCTGAAAACTCTCATTCTTTCAAACTGCACAAGACTCAAGAAGCTTCCAGAGATTCAGGAAAACATGGAGAGTTTGATGGAGCTTTTTCTAGATGGGAGTGGTATAATAGAACTGCCTTCCTCAATTGGGTGTCTAAATGGGCTTGTTTTTTTGAATCTGAAGAATTGTAAAAAACTTGCAAGTCTTCCGCAAAGCTTTTGTGAGTTGACATCTCTTAGGACTCTTACTCTCTGTGGTTGCTCAGAGCTGAAGGATTTGCCAGATAACTTGGGGAGCCTACAATGTTTAACAGAGCTGAATGCAGATGGAAGTGGTGTACAAGAGGTTCCACCCTCTATTACTCTTTTGACAAACCTTCAAATATTATCATTAGCAGGATGTAAGGGAGGGGAATCCAAGTCAAGGAATATGATCTTCTCTTTCCACTCATCACCAACAGAAGAATTGCGACTGCCTTCTTTCTCGGGTTTATACTCCTTGAGAGTGTTAATTCTACAACGTTGCAACCTATCGGAAGGAGCATTGCCCAGTGATCTTGGGTCCATACCCTCATTGGAAAGGTTAGATCTGAGCAGGAACAGTTTCATTACCATACCTGCTAGCCTCAGTGGACTTTCTCGGCTGCGAAGTCTCACATTAGAATACTGCAAGAGTCTTCAATCATTGCCAGAGCTTCCATCAAGTGTTGAAAGTTTAAATGCCCATAGTTGCACATCCCTGGAAACCTTCACATGTTCATCAAGTGCATACACATCCAAGAAGTTTGGGGATCTCAGATTTAATTTCACTAATTGCTTTAGACTAGGAGAGAATCAAGGCAGTGACATTGTGGGAGCTATATTAGAGGGAATCCAGCTTATGTCATCAATACCAAAATTTCTGGTGCCAGATCGGGGGATCCCTACTCCACACAATGAATATAATGCTTTGGTTCCTGGAAATAGAATTCCAGAGTGGTTCAGGCATCAGAGTGTAGGGTGTTCTGTAAATATAGAGCTGCCTCAACATTGGTATAATACCAAGTTGATGGGATTGGCTTTTTGTGCTGCTCTCAATTTCAAGGGTGCTATGGATGGGAACCCCGGTACAGAACCGTCATCCTTTGGTTTAGTTTGTTATCTGAATGATTGTTTTGTGGAGACTGGCCTGCACTCATTGTATACTCCACCTGAAGGATCCAAATTTATTGAGTCAGATCACACGTTGTTTGAGTATATATCTCTTGCTCGACTAGAGATCTGCCTCGGTAATTGGTTCAGAAAGCTAAGCGACAATGTGGTTGCTTCATTTGCATTGACGGGCTCAGATGGTGAGGTGAAAAAGTGTGGGATTCGTCTAGTATACGAGGAAGACGAGAAAGATGGCGGATGCAGCTTTCCTTTCGGCACCACGTGGCCGGGAGATGGAGATGGAGATGACTCTAACTACAAAAAAGGTCTTCTGATGGACCCTTCGGCTCCTCCAAAATTGGATTCCCTCTATATGGACCCCTCGGCTCCTCCAAAATTGGATTCCCTCTATCCCCTCCATCTCCTATGCTCCCCCTGTAAGCTTCGAAACCTTCTCATACTCTTGAAGCCTTTGGCTATCAAACATTGGATTTTGGAAATATTTTATTGA 3555 0.4003 MCHCSQIEFDRHESKLIEEIVRDIWNKLVGTSPSYMKGLVGMESRLEAMDSLLCIGSLDVRMVGIWGMAGIGKTTIAKVIYERIYTQFEGCCFLSNVREESYKHGLPYLQMELLSQILKERNPNAGLFNKGINFMKDVLHSRKVLIILDDVDQRKQLEDLAGDNNWFGSGSRIIITTRDRHLLTCQEVDAIYEVKELDNDEALKLFCLYAFRHKHGTEDFRQLCGHALDYTSGLPLALKVLGSSLYTKGIHEWKSELDKLKQFPNKEVQNVLKTSFEGLDDNEQNIFLDIAFFYKGHDKDFVGDILDSCGFFFGIGIRNLEDKSLITISENKLCMHDLLQEMGWEIVRQKSEVPGERSRLRVHEDINHVLTTNTGTEAVEGIFLDLSASKELNFSIDAFTKMKRLRLLKICNVQIDRSLGYLSKKELIAYTHDVWIERNYLYTQNKLHLYEDSKFLSNNLRDLYWHGYPLKSFPSNFHPEKLVELNMCFSRLKQPWEGKKGFEKLKSIKLSHSQHLTKIPDFSGVPNLRRLILKGCTSLVEVHPSIGALKKLIFLNLEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEVQGNMEHLPNLSLEGTAIKGLPLSIENLTGLALLNLKECKSLESLPRSIFKLKSLKTLILSNCTRLKKLPEIQENMESLMELFLDGSGIIELPSSIGCLNGLVFLNLKNCKKLASLPQSFCELTSLRTLTLCGCSELKDLPDNLGSLQCLTELNADGSGVQEVPPSITLLTNLQILSLAGCKGGESKSRNMIFSFHSSPTEELRLPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQSLPELPSSVESLNAHSCTSLETFTCSSSAYTSKKFGDLRFNFTNCFRLGENQGSDIVGAILEGIQLMSSIPKFLVPDRGIPTPHNEYNALVPGNRIPEWFRHQSVGCSVNIELPQHWYNTKLMGLAFCAALNFKGAMDGNPGTEPSSFGLVCYLNDCFVETGLHSLYTPPEGSKFIESDHTLFEYISLARLEICLGNWFRKLSDNVVASFALTGSDGEVKKCGIRLVYEEDEKDGGCSFPFGTTWPGDGDGDDSNYKKGLLMDPSAPPKLDSLYMDPSAPPKLDSLYPLHLLCSPCKLRNLLILLKPLAIKHWILEIFY* 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1796 1184 Gene3D - 25 191 IPR027417 -
Vvi18g1796 1184 Gene3D Ribonuclease Inhibitor 367 589 IPR032675 -
Vvi18g1796 1184 SUPERFAMILY RNI-like 750 899 - -
Vvi18g1796 1184 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 592 IPR044974 GO:0006952
Vvi18g1796 1184 Gene3D Ribonuclease Inhibitor 783 915 IPR032675 -
Vvi18g1796 1184 Gene3D Ribonuclease Inhibitor 590 782 IPR032675 -
Vvi18g1796 1184 Pfam NB-ARC domain 52 273 IPR002182 GO:0043531
Vvi18g1796 1184 SUPERFAMILY "Winged helix" DNA-binding domain 267 370 IPR036390 -
Vvi18g1796 1184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 290 IPR027417 -
Vvi18g1796 1184 PRINTS Disease resistance protein signature 138 152 - -
Vvi18g1796 1184 PRINTS Disease resistance protein signature 641 657 - -
Vvi18g1796 1184 PRINTS Disease resistance protein signature 62 77 - -
Vvi18g1796 1184 PRINTS Disease resistance protein signature 231 245 - -
Vvi18g1796 1184 SUPERFAMILY L domain-like 430 774 - -
Vvi18g1796 1184 Gene3D - 196 280 IPR042197 -
Vvi18g1796 1184 Pfam C-JID domain 956 1097 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1796 Vvi-Chr18 24631818 24635963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1796 572 856 WRKY Transcription Factor Family AT4G12020 32.450 1.83e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1796 - - vri:117905711 2305.41