Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1791 ATGACCGGATCGGACCGGAATGGTGACCGGCCGACGGTTGGACCGGTCCGACCGGCCGGTCCGGTCCGGTTTTTAAAACATTGCTTATTATGTATTGGATCACTTGATGTTCGGATGGTAGGAATTTGGGGCATGGCTGGCATAGGGAAGACTACCATTGCTAAAGTTATTTATGAGCGAATCTACACTCAATTTGAAGGTTGTTGCTTTCTTTCAAATGTTAGAGAAGAGTCATACAAACATGGTCTACCTTATTTACAAATGGAACTCCTTTCACAAATTTTAAAGGAAAGGAAACCAAATGCAGGACTTTTTAATAAAGGAATCAATTTTATGAAGGATGTGCTCCACTCTAGGAAGGTCCTTATTATCCTTGATGATGTGGATCAACGACAACAGTTGGAAGATTTAGCAGGATACAATAATTGGTTTGGTTTAGGAAGTCGAATTATCATAACAACTAGAGATCGACATTTGCTAACTTGTCAAGAAGTGGATGCAATATACGAAGTTAAGGAATTAGACAATGATGAAGCTCTTAAGCTATTTTGTCTGTATGCCTTTAGACATAGGCATGGTACAGAAGATTTTAGGCAACTATGTGGCCATGCATTAGATTATACTAGTGGCCTCCCGTTAGCCCTTAAAGTCTTGGGTTCTTCTCTATACACAAAAGGCATACATGAATGGGAGAGTGAATTGAACAAACTCAAACAATTCCCCAACAAAGAAGTTCAAAATGTGCTCAAAACAAGTTTTGAAGGGTTAGATGACAATGAACAAAATATATTTCTTGATATTGCATTCTTTTATAAAGGGCATGATAAAGATTTTGTTGGAGACATACTAGATAGTTGTGGTTTCTTCTTTGGCATTGGGATAAGAAATCTTGAAGATAAGTCACTTATAACTATTTCGGAGAATAAGTTGTGCATGCATGATTTATTACAAGAAATGGGTTGGGAAATTGTTAGACAAAAATCTGAAGTACCTGGCGAGCGTAGCAGGTTAAGAGTTCATGAGGACATCAATCATGTACTAACAACAAATACGGGGACCGAAGCAGTTGAAGGCATATTCCTTGATTTGTCTGAATCAAAAGAGTTAAACTTTAGTATTGACGCCTTTACAAAGATGAAGAGATTAAGATTGCTCAAAATTTGTAATGTGCAAATAGATAGAAGCTTAGGATATTTGTCAAAAAAAGAGTTAATTGCCTATACTCATGATGTTTGGACAGAGAGGAATTATTTGTACACTCAAAATAAATTGCACCTATATGAAGATTCCAAATTTCTATCCAACAACTTAAGAGATCTCTATTGGCATGGATACCCTTTGAAGTCCTTTCCATCAAATTTTCATCCAGAGAAGCTTGTTGAGCTAAACATGTGCTTTAGTAGACTTAAACAACTGTGGGAAGGAAAAAAGGGATTTGAGAAGTTGAAATCCATCAAACTTAGCCACTCTCAACATCTAACCAAAACACCAGACTTCTCTGGAGTGCCAAACCTTAGGAGACTAATTCTCAAAGGTTGTACAAGTTTGGTCGAGGTTCACCCATCTATTGGAGCTCTCAAGAAGCTTATTTTCCTGAATTTAGAAGGCTGCAAAAAACTCAAGAGTTTCTCAAGCAGCATCCATATGGAGTCCCTTCAAATTCTTACTCTCTCTGGCTGCTCAAAACTGAAGAAGTTTCCAGAGGTCCAAGGGAATATGGAACATCTACCAAATCTTTCTTTAGAAGGGACTGCTATAAAAGGATTGCCCTTGTCCATTGAAAATCTCACTGGACTTGCTTTGTTAAATCTGAAAGAGTGCAAAAGCCTTGAGTCACTACCCAGAAGCATTTTTAAGTTGAAGTCCCTGAAAACTCTCATTCTTTCAAACTGCACAAGACTCAAGAAGCTTCCAGAGATCCAGGAAAACATGGAGAGTTTGATGGAGCTTTTTCTAGATGGGAGTGGTATAATAGAACTGCCTTCCTCAATTGGGTGTCTAAATGGGCTTGTTTTTTTGAATCTGAAGAATTGTAAAAAACTTGCAAGTCTTCCGCAAAGCTTTTGTGAGTTGACATCTCTTGGGACTCTTACTCTCTGTGGTTGCTCAGAGCTGAAGGAATTGCCAGATGACTTGGGGAGCCTACAATGTTTAGCAGAGCTGAATGCAGATGGAAGTGGTATACAAGAGGTTCCACCCTCTATTACTCTTTTGACAAACCTTCAAAAATTATCATTAGCAGGATGTAAGGGAGGGGATTCCAAGAGCATTGCCCAGTGA 2280 0.386 MTGSDRNGDRPTVGPVRPAGPVRFLKHCLLCIGSLDVRMVGIWGMAGIGKTTIAKVIYERIYTQFEGCCFLSNVREESYKHGLPYLQMELLSQILKERKPNAGLFNKGINFMKDVLHSRKVLIILDDVDQRQQLEDLAGYNNWFGLGSRIIITTRDRHLLTCQEVDAIYEVKELDNDEALKLFCLYAFRHRHGTEDFRQLCGHALDYTSGLPLALKVLGSSLYTKGIHEWESELNKLKQFPNKEVQNVLKTSFEGLDDNEQNIFLDIAFFYKGHDKDFVGDILDSCGFFFGIGIRNLEDKSLITISENKLCMHDLLQEMGWEIVRQKSEVPGERSRLRVHEDINHVLTTNTGTEAVEGIFLDLSESKELNFSIDAFTKMKRLRLLKICNVQIDRSLGYLSKKELIAYTHDVWTERNYLYTQNKLHLYEDSKFLSNNLRDLYWHGYPLKSFPSNFHPEKLVELNMCFSRLKQLWEGKKGFEKLKSIKLSHSQHLTKTPDFSGVPNLRRLILKGCTSLVEVHPSIGALKKLIFLNLEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEVQGNMEHLPNLSLEGTAIKGLPLSIENLTGLALLNLKECKSLESLPRSIFKLKSLKTLILSNCTRLKKLPEIQENMESLMELFLDGSGIIELPSSIGCLNGLVFLNLKNCKKLASLPQSFCELTSLGTLTLCGCSELKELPDDLGSLQCLAELNADGSGIQEVPPSITLLTNLQKLSLAGCKGGDSKSIAQ* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1791 759 Gene3D Ribonuclease Inhibitor 567 755 IPR032675 -
Vvi18g1791 759 Pfam Leucine Rich Repeat 458 477 IPR011713 -
Vvi18g1791 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 267 IPR027417 -
Vvi18g1791 759 Gene3D - 21 168 IPR027417 -
Vvi18g1791 759 PRINTS Disease resistance protein signature 208 222 - -
Vvi18g1791 759 PRINTS Disease resistance protein signature 618 634 - -
Vvi18g1791 759 PRINTS Disease resistance protein signature 115 129 - -
Vvi18g1791 759 PRINTS Disease resistance protein signature 39 54 - -
Vvi18g1791 759 Gene3D - 173 257 IPR042197 -
Vvi18g1791 759 SUPERFAMILY L domain-like 313 750 - -
Vvi18g1791 759 Gene3D Ribonuclease Inhibitor 357 566 IPR032675 -
Vvi18g1791 759 Pfam NB-ARC domain 29 250 IPR002182 GO:0043531
Vvi18g1791 759 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 35 569 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1791 Vvi-Chr18 24591355 24594186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1791 549 746 WRKY Transcription Factor Family AT4G12020 35.349 3.26e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1791 - - vvi:100261322 1417.14