Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1790 ATGGCTTCTTCTTCAACCAGCAGTCTCACACTACCTTCATCCTCTTCCACTCATCGATGGAAGTATGATGCCTTCCTTAGTTTCAGAGGTGAAGATACCCGCAAAAACTTTACTACCCATCTCCACGCGGCCCTTTGTCAGAAGGGAATCAACACCTTCAAAGATAACCTACTCCTGAGAGGCGAAAAAATATCTGCAGGACTCCTACAAGCAATTGAAGAATCGAGGTTTTCCATCATCATTTTTTCCGAAAACTATGCTTCTTCAAGTTGGTGTTTGGATGAACTTACAAAGATTCTTGAGTGTGTCGAAGAGGGGGGACATACAGCTCTACCGGTTTTCTATAACGTGGATCCCTCCCATGTAAGAAAACAAAAAGGGTGTTTTGCGGACGCATTTGCAGAGCATGAACAAGTATACAGGGAGAAGATGGAGAAAGTGGTCAAGTGGAGAAAAGCTTTAACTGAAGTAGCTACAATTTCTGGATGGGATTCACGAGACAGAGATGAATCCGAGGTTATTGAGGAAATTGTTACCAGGATTTTGAATGAGCCGATTGATGCATTCTCAAGCAACGTGGATGCTCTAGTTGGAATGGACTCTCGTATGGAGGACCTGCTTTCACTGTTATGTATTGGGTCTAATGATGTTCGGTTTGTTGGAATTTGGGGCATGGCTGGCATAGGTAAGACTACCATTGCTGAAGCTATTTATGACCGAATCTACACTAAATTTGATGGTTGCTGCTTTCTTAAAGATGTTAGAGAAGACTCACAAAGACATGGTCTAACTTATTTACAAGAAACACTCCTTTCACGAGTTTTAGGGGGAATCAACAATCTCAATAGAGGAATCAATTTTATAAAAGCAAGACTCCACTCTAAGAAGGTCCTAATTGTTCTTGACAATGTGGTGCACCGGCAAGAGTTGGAGGCTTTAGTAGGAAGTCATGATTGGTTTGGTCCAGGAAGTCGAATCATCATAACTACTAGAGAAAAGCGTTTGCTAATTGAAAGTCTCACATTAGAACACTGCAAGAGTCTTCGATCATTGCCAGAGCTTCCATCAAGTATTGAATATTTAAATGCCCATAGTTGCACATCCCTGGAAACGCTTTCATGTTCATCAAGTACATACACATCGAAGTTGGGGGATCTCAGATTTAATTTTACTAATTGCTTTAGACTAGGAGAGAATCAAGGCAGTGACATTGTGGAAACCATACTTGAGGGAACTCAGCTTGCGTCATCAATGGCAAAACTTCTGGAGCCAGATGAGAGGGGGCTATTACAACATGGATATCAAGCTCTTGTTCCTGGAAGTAGAATTCCAAAGTGGTTCACCCATCAGAGTGTAGGGTCTAAGGTAATTGTAGAGCTGCCTCCACATTGGTATAATACCAAGTGGATGGGATTGGCTGCTTGTGTTGTTTTCAACTTCAAGGGTGCTGTCGATGGGTACCGTGGTACATTCCCTTTAGCTTGTTTTCTCAATGGTCGTTATGCTACGCTATCCGACCACAATTCCTTGTGGACTTCATCGATTATTGAGTCAGATCACACGTGGTTTGCGTATATATCTCGTGCTGAACTAGAGGCCCGGTACCCTCCTTGGACCGGAGAGCTCAGTGACTATATGCTGGCTTCATTTCTATTCCTTGTCCCAGAAGGCGCGGTCACTTCACACGGCGAGGTGAAAAAGTGTGGGGTTCGTCTAGTATACGAGGAAGATGGGAAATATGATGGATGCAGCTTTCCTTTCAGTACCATGTGGCCGGGAGATGGAGATGGAGGCGTCTTCTGA 1803 0.4348 MASSSTSSLTLPSSSSTHRWKYDAFLSFRGEDTRKNFTTHLHAALCQKGINTFKDNLLLRGEKISAGLLQAIEESRFSIIIFSENYASSSWCLDELTKILECVEEGGHTALPVFYNVDPSHVRKQKGCFADAFAEHEQVYREKMEKVVKWRKALTEVATISGWDSRDRDESEVIEEIVTRILNEPIDAFSSNVDALVGMDSRMEDLLSLLCIGSNDVRFVGIWGMAGIGKTTIAEAIYDRIYTKFDGCCFLKDVREDSQRHGLTYLQETLLSRVLGGINNLNRGINFIKARLHSKKVLIVLDNVVHRQELEALVGSHDWFGPGSRIIITTREKRLLIESLTLEHCKSLRSLPELPSSIEYLNAHSCTSLETLSCSSSTYTSKLGDLRFNFTNCFRLGENQGSDIVETILEGTQLASSMAKLLEPDERGLLQHGYQALVPGSRIPKWFTHQSVGSKVIVELPPHWYNTKWMGLAACVVFNFKGAVDGYRGTFPLACFLNGRYATLSDHNSLWTSSIIESDHTWFAYISRAELEARYPPWTGELSDYMLASFLFLVPEGAVTSHGEVKKCGVRLVYEEDGKYDGCSFPFSTMWPGDGDGGVF* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1790 600 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 186 - -
Vvi18g1790 600 Gene3D - 188 341 IPR027417 -
Vvi18g1790 600 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 374 IPR044974 GO:0006952
Vvi18g1790 600 SMART till_3 21 160 IPR000157 GO:0007165
Vvi18g1790 600 Pfam TIR domain 21 191 IPR000157 GO:0007165
Vvi18g1790 600 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 163 IPR035897 -
Vvi18g1790 600 Pfam C-JID domain 438 577 IPR045344 -
Vvi18g1790 600 ProSiteProfiles TIR domain profile. 20 185 IPR000157 GO:0007165
Vvi18g1790 600 Gene3D - 18 187 IPR035897 -
Vvi18g1790 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 350 IPR027417 -
Vvi18g1790 600 PRINTS Disease resistance protein signature 219 234 - -
Vvi18g1790 600 PRINTS Disease resistance protein signature 291 305 - -
Vvi18g1790 600 Pfam NB-ARC domain 203 335 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1790 Vvi-Chr18 24574674 24580098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1790 22 366 WRKY Transcription Factor Family AT4G12020 32.571 4.39e-50 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1790 - - vvi:100254455 657.136