Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1776 ATGATGGTGCGACTTATGCTAGTAGGTTTGCTGCTATTGGCTTCAGCTGCAGCTGCTGCTGCAACAGTTGGTCAAGCCAAGGAAGGTTGCCTAGACAAATGTGGAGATGTTAGCATCCCATATCCGTTTGGTACTAATGAAGAGCAGTGTTACCTCAGCCCTTATTTCCTAGTTACTTGTAACCATTCCTCCAACCCTCCCAAACTGCTATTAGGCAAACCATCTCCAGAGGGAAACAATGTCCAAGTGCTGGATATTTCGCTGGAGGGTGAGTTGCTCATCTTGAACTACGTAAGCCATGATTGTTACAATAGGTCCGGTGGGCTTGACTCCCTCTATTCTTACGGTTCCCATCTGACGCCGGGCCAATTCAACATCTCGAGTACCAGAAACAAGTTCACTATGGTTGGTTGCGACACTTATGCCTGGTTTAGAGGTCAAAGAGGTGAGGAAAGCTACAGAACTGGGTGCATGTCATTATGTGACAACATCACAGCTGTACGAAATGGATCTTGCTCTGGAAATGGTTGTTGCCAGACCTCCATCCCTGATGAATTATCAGATATACGTTTGACATTGGGCACCTTCAATAATTATTCTGAAATCTGGGAATTCAATCCCTGCGGCTATGCCTTTATTGTGGAAGAATCTCACTTCACTTTCTCCTCCGACGATCTAAAAGATTTGAAGGGCATAGAGAAGCTTCCTATGGTATTTGATTGGGCATTTGGCAAGGAAACATGTCAAGTAGAAGATGAAAACAGCCAGACCAATTACGCATGCAAGGGGAACAGCAGCTGCAATAAGAGGAAAACGGGTTGGGGCTATCTTTGCAACTGCTCAGAGGGTTACCAAGGGAACCCATACCTGGAGTCTGGTTGCCAAGATATAAATGAATGTGAGAATTCCATCCTCAACAAGTGTGAAAATCCAGAAACATGCGTCAATACCCAAGGAAATTATACTTGTTCTTGCCCCATGTGGTACCAGGGAGATGGCAAAATCGATGGTCAACGCTGTATTCCCAATCGCTTGCAAATGATTCACGCTGCCATGGGCATTGGAATTGCCTTGCTCGTATTATTGGTGAGCAGCACTTGGCTGTTTTGGGCTTTGAAGAAAAGAAGGTTCATCAAACTCAAAAAGAAATATTTTCAACAAAATGGTGGTTCAGAGCTACGACAACTCTCCAGGCAAGGATCTACCGCAAGAATTAAAATTTTTACCTTTGAAGAGCTTGAGAAAGCCACCAAAAAATATGATGAGAGCAATATCATCGGCCGAGGAGGTTTTGGCACAGTTTATAAAGGAACTTTAACCGATGGTAGGATTGTTGCAATTAAGAAGTCCAAGATGGTGGAACAAAGCCAAGGTAAAGACTTCATAAATGAGGTGGGTATTCTATCTCAAATAAACCATCGTCATGTGATACAACTCTTGGGTTGCTGTTTGGAAACACAAGTGCCTTTACTAGTCTATGAGTTCATCAACAATGGCACCCTCTCCGACCACATACATAATGAAAATAAGGCATCTGCTATCATGTGGGAAACTCGTTTAAGGATTGCCATCCAAACCGCAGAAGCCCTATATTATTTACATTCTGTGGCATCTACGCCTATCATTCATAGAGATGTTAAGTCTACCAATATACTATTAGATGCGGAGTACAATGTAAAGGTGTGTGACTTTGGAGCTTCAAGATTGGTTCCATTGGATCAAACTCAGTTATCTACAGCTGTTCAGGGAACTCCTGGATACTTAGACCCGGAGTCTATGCAGACAAACCAAGTGACCGAGAAAAGTGACGTTTATAGTTTCGGAGTGGTCCTTGTAGAGCTACTCACAGGCAAGAAAGCACTATTTTTTGATAGACCCAAGGAGCAGAGAATTCTAACTATGTTTTTCCTCTTTGCCCTGAAAGATGACAGCTTATTTCAGGTTCTTGAGGATTGTATAGTGAACAATGGAAACCATATGCAGATTTTGAAAGTTGCTCAACTTGCGAAAAGATGCCTAAGCATAAAAGGGGAGGACAGACCCACAATGAAGGAAGTAGTGTTGGAACTAGAGATAGTGAGAATGATTGGGGAAAATGCTGAACAGAATCCAGAAGATAATGCATACTTGCTTAGAAAATCATCAGCTCACTGCTATTTGGGTGGTGCTGAATTATCCACTGCTACACATAGCATGGTGGGCAATTTCTTGTTACCAGTAAGTGATGCAAGATAA 2235 0.4277 MMVRLMLVGLLLLASAAAAAATVGQAKEGCLDKCGDVSIPYPFGTNEEQCYLSPYFLVTCNHSSNPPKLLLGKPSPEGNNVQVLDISLEGELLILNYVSHDCYNRSGGLDSLYSYGSHLTPGQFNISSTRNKFTMVGCDTYAWFRGQRGEESYRTGCMSLCDNITAVRNGSCSGNGCCQTSIPDELSDIRLTLGTFNNYSEIWEFNPCGYAFIVEESHFTFSSDDLKDLKGIEKLPMVFDWAFGKETCQVEDENSQTNYACKGNSSCNKRKTGWGYLCNCSEGYQGNPYLESGCQDINECENSILNKCENPETCVNTQGNYTCSCPMWYQGDGKIDGQRCIPNRLQMIHAAMGIGIALLVLLVSSTWLFWALKKRRFIKLKKKYFQQNGGSELRQLSRQGSTARIKIFTFEELEKATKKYDESNIIGRGGFGTVYKGTLTDGRIVAIKKSKMVEQSQGKDFINEVGILSQINHRHVIQLLGCCLETQVPLLVYEFINNGTLSDHIHNENKASAIMWETRLRIAIQTAEALYYLHSVASTPIIHRDVKSTNILLDAEYNVKVCDFGASRLVPLDQTQLSTAVQGTPGYLDPESMQTNQVTEKSDVYSFGVVLVELLTGKKALFFDRPKEQRILTMFFLFALKDDSLFQVLEDCIVNNGNHMQILKVAQLAKRCLSIKGEDRPTMKEVVLELEIVRMIGENAEQNPEDNAYLLRKSSAHCYLGGAELSTATHSMVGNFLLPVSDAR* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1776 744 FunFam Fibrillin 2 291 336 - -
Vvi18g1776 744 Pfam Wall-associated receptor kinase galacturonan-binding 30 92 IPR025287 GO:0030247
Vvi18g1776 744 CDD STKc_IRAK 426 691 - -
Vvi18g1776 744 ProSitePatterns Calcium-binding EGF-like domain signature. 296 323 IPR018097 GO:0005509
Vvi18g1776 744 FunFam Wall-associated receptor kinase 2 392 495 - -
Vvi18g1776 744 Pfam Protein kinase domain 420 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1776 744 SUPERFAMILY EGF/Laminin 295 332 - -
Vvi18g1776 744 Gene3D Transferase(Phosphotransferase) domain 1 496 717 - -
Vvi18g1776 744 SUPERFAMILY Protein kinase-like (PK-like) 401 692 IPR011009 -
Vvi18g1776 744 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 18 699 IPR045274 GO:0007166
Vvi18g1776 744 ProSitePatterns Protein kinases ATP-binding region signature. 426 449 IPR017441 GO:0005524
Vvi18g1776 744 SMART serkin_6 420 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1776 744 Gene3D Laminin 250 341 - -
Vvi18g1776 744 SMART egfca_6 296 341 IPR001881 GO:0005509
Vvi18g1776 744 SMART egf_5 247 295 IPR000742 -
Vvi18g1776 744 SMART egf_5 299 341 IPR000742 -
Vvi18g1776 744 FunFam Wall-associated receptor kinase 2 496 712 - -
Vvi18g1776 744 Gene3D Phosphorylase Kinase; domain 1 392 495 - -
Vvi18g1776 744 ProSiteProfiles EGF-like domain profile. 296 341 IPR000742 -
Vvi18g1776 744 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 314 325 IPR000152 -
Vvi18g1776 744 CDD EGF_CA 296 332 - -
Vvi18g1776 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 541 553 IPR008271 GO:0004672|GO:0006468
Vvi18g1776 744 ProSiteProfiles Protein kinase domain profile. 420 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1776 744 Pfam Calcium-binding EGF domain 296 338 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1776 Vvi-Chr18 24275038 24277541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1776 24 711 Receptor kinase-like Gene Family AT1G21230 44.965 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi18g1776 Pkinase 2.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1776 - - vvi:100259679 1485.7