Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1775 ATGGTCGAACGAATCCAAGGTAAAGACTTCATAAATGAGGTGGGTATTCTATCTCAAATAAATCATCGTCATGTGATACAACTCTTGGGTTGCTGTTTGGAAACACGAGTGCCTTTACTAGTTTACGAGCTCATTAACAATGGCACCCTCTCCGACCACATACATGATGAAAATAAGGCATCTGCTATTATGTGGGAAACTCGCTTAAGGATTGCCATCCAAACCGCGGAAGCACTCTATTATTTACATTCTGTAGCATCTTCGCCTATCGTTCATAGAGATGTTAAGTCTACGAATATACTCTTAGATGAGGAGTACAATGCAAAGATGTGTGACTTTGGAGCTTCAAGATTGGTTCCATTGGATCAAAATCAGTTATCTACAGCTGTTCAGGGAACTCCTGGATACTTGGACCCTGAGTCTTTGCAGACATACCGAGTGACTGAGAAAAGTGATGTTTATAGTTTTGGAGTGGTCCTTGTAGAGCTACTCACAGGCAAGAAAGCACTGTTTTTTGATAGACCCAAGGAGCAGAGAATTCTAACTATGTTTTTCCTCTTTGCCCTGAAAGATGACAGCTTATTTCAGGTTCTTGAGGATTGTATAGTGAACAATGGAAACCATATGCAGATTTTGAAAGTTGCTCAGCTTGCGAAAAGGTGCCTAAGCATAAAAGGGGAGGACAGACCCACAATGAAGGAAGTACTGTTGGAACTAGAGATGATAAGAATGATTGGGGAAAATGCTGAACAGAATCCAGAAGAAAATACATACTTGCTTGGAGAATCATATGCTCACTACCATTTGGGTGGTGGTGAATCATCCATTGCTACACATAGCATGGCGAGCAGTTTCTTAAAAATAAAGTTCTGGGAATATTTTATTGTATATCTATGGTTGTCTTAG 906 0.4018 MVERIQGKDFINEVGILSQINHRHVIQLLGCCLETRVPLLVYELINNGTLSDHIHDENKASAIMWETRLRIAIQTAEALYYLHSVASSPIVHRDVKSTNILLDEEYNAKMCDFGASRLVPLDQNQLSTAVQGTPGYLDPESLQTYRVTEKSDVYSFGVVLVELLTGKKALFFDRPKEQRILTMFFLFALKDDSLFQVLEDCIVNNGNHMQILKVAQLAKRCLSIKGEDRPTMKEVLLELEMIRMIGENAEQNPEENTYLLGESYAHYHLGGGESSIATHSMASSFLKIKFWEYFIVYLWLS* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1775 301 Gene3D Phosphorylase Kinase; domain 1 2 48 - -
Vvi18g1775 301 ProSiteProfiles Protein kinase domain profile. 1 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1775 301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 90 102 IPR008271 GO:0004672|GO:0006468
Vvi18g1775 301 SMART serkin_6 2 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1775 301 Gene3D Transferase(Phosphotransferase) domain 1 49 265 - -
Vvi18g1775 301 FunFam Protein kinase superfamily protein 2 48 - -
Vvi18g1775 301 SUPERFAMILY Protein kinase-like (PK-like) 8 242 IPR011009 -
Vvi18g1775 301 Pfam Protein tyrosine and serine/threonine kinase 6 238 IPR001245 GO:0004672|GO:0006468
Vvi18g1775 301 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 6 251 IPR045274 GO:0007166
Vvi18g1775 301 FunFam Wall-associated receptor kinase 2 45 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1775 Vvi-Chr18 24259631 24260656 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1775 6 263 Receptor kinase-like Gene Family AT3G25490 53.640 7.43e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi18g1775 PK_Tyr_Ser-Thr 3.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1775 - - vvi:104882792 568.54