Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1774 ATGATTTGGCTACATGGTCTCTTAGATGAATTGGCTAAGAAGCAGGAGATGAGAATTCTACACAGTGACAGTCATAGTGCAATTTTTCTTGCCAAAAATTCGGTTTTTCATTCAAAGTCGAAGCATATACAAACAAAATACCACTTTATCCGTTACCTTATTGAAGATAAACTGGTAATACTTGAAAAGATTTATGGATCTAAGAACCCGGCAGACATGTTGACTAAGGGTGTCACTATTGAGAAGTTGAAGCTATGCACAGCTTCAATTGCTGCAACAGTTAATGGTCAAGCCAAGGAAGGTTGCCTAGACAGATGTGAGGCTGTTATCATCCCATATCCGTTTGGCACAGATGAGCACTGTTACCTCAGCCCTTATTTCTGGGTTACTAGTAACCATTCGTCCAACCCTCCTAAACTATTATTAGGCAAACCATCTCCAGAGGGAAACAATGTCCAAGTGCTGGATATTTCGCTGGAGGGTGAGTTGCTCATCTTGAACTACGTAAGCCATGACTGTTACGACAGTCTCGGTGAGGCTGACTCCCTCTATTCTTACGATTCCTATCTGAAGCCGGGCCAATTCAACATCTCGAGTACCAAAAACAAGTTCACTATGGTTGGTTGTGACACTTTTGCCTGGTTTAAAGGTCAAAGAGGTCACGAAAGCTACAGAACTGGGTGCATGTCAATATGTGACAATATCACAGATGTCCAAAATGGATCTTGCTCTAGAAATGGTTGTTGCCAGACCTCCATCCCTGATGGGTTGTCGGCTATAGATTTGACACTCGGCAGCTTCAATAATTATTCTGAAATCTGGGAATTCAATCCCTGCGGCTATGCCTTTATTGTGGAAGAATCTAACTTCAATTTCTCCTCCAACGATCTAAGAGATTTGAAGAGTAAAACGGAGCTGCCTATGGTGTTTGATTGGGCATTGGACAAGGAGACATGTCAAGTAGATGTAAACGACCAGACCAATAACGCATGCAAGGGGAACAGCACCTGCAACAAGAGGATAACGGGTTGGGGCTATCTTTGCAACTGCTCAGAGGGTTACCAAGGGAACCCATACCTGGAGCCTGGTTGCCAAGATATAATTGAATGTGAGAATTCCATCCTCAACAAGTGTGAAAATCCAGAAACATGCATCAATACCCAAGGAAATTATACTTGTTCTTGCCCCATGTGGTACCATGGAGATGGCAAAATCGATGGTCAACGCTGTATTCCCAATCGCTTACAAATGATTCACGTTGCCATGGGTCAGAAAAATTGTAAATTTTCTAATTTATACTTAAAACTTGTAGTCGCATTTCAGTGTGCCTCGAATGTAGAACACCTAGAGAATCTAGTTTTTATTTTCTTCTATTCAAAAGTTCTAGAGCTCATATATAGTTCTCTCAAATATTGTTTAATATCTCTAATTAATATTTGTATTGGAATTGCCTTGGTCGTATTAGTGGCGGGCAGCACTTGGCTGTATTGGGCTTTGAAGAAAAGAAGGTTCGTCAAACTCAAAAAGAAATATTTTCAACAAAACGGTGGTTCAGAGCTTCGACAACAACTCTCAGGACAAGGATCTACCGAAAGAATTAAATTTTTTACCTCTGAAGAGCTTGAGAAAGCCACCAAAAATTATGATGAGAGCAATATAATTGGTCGAGGAGGTTTTGGCACAGTTTATAAAGGAACTTTAACCGATGGTAGGATTGTTGCAATTAAGAAGTCCAAGATGGTCGAACGAATCCAAGGCAAAGGCTTCATAAATGAGGTGGGTATTCTATCTCAAATAAATCATCGTCATGTGATACAACTCTTGGGTTGCTGTTTGGAAACACAAGTGCCTTTACTAGTTTACGAGTTCATCAACAATGGCACCCTCTCTGACCACATACATGATGAAAATAAGGCATCTGCTATTATGTGGGAAACTCGCTTAAGGATTGCCATCCAAACCGCGGAAGCACTCTATTATTTACATTGTGTAGCATCTACGCCTATCGTTCATAGAGATGTTAAGTCTTCAAATATACTCTTAGATGAGGAGTACAATGCAAAGATGTGTGACTTTGGAGCTTCAAGATTGGTTCCATTGGATCAAAATCAGTTATCTACAGCTGTTCAGGGAACTCCTGGATACTTAGACCCTGAGTCTTTGCAGACAAACCGAGTGACTGAGAAAAGCGATGTTTATAGTTTTGGAGTGGTCCTTGTAGAGCTACTCACAGGAAAGAAAGCACTGTTTTTTGATAGACCCAAGGAGCAGAGAATTCTAACTATATTTTTCCTCTTTCCCCTGAAAGATGACAGCTTATTTCAGGTTCTTGAGGATTGTATAGTGAACAATGGAAACCATAAGCAGATTTTGAAAGTTGCTCAGCTTGCGCAAAGGTGCCTAAGCATAAACGGGGAGGACAGACCCACAATGAAGGAAGTAATGTTGGAACTAGAGATGATAAGAATGATTGGGGAAAATGCTGAACAGAATCCAGAAGAAAATACATACTTGCTTGGAGAATCATATGCTCACTACTATTTGGGTGGTGGTGAATCATCCATTGCTACACATAGCATGACGGGCAGTTTCTTGTTACCAATTTAG 2607 0.407 MIWLHGLLDELAKKQEMRILHSDSHSAIFLAKNSVFHSKSKHIQTKYHFIRYLIEDKLVILEKIYGSKNPADMLTKGVTIEKLKLCTASIAATVNGQAKEGCLDRCEAVIIPYPFGTDEHCYLSPYFWVTSNHSSNPPKLLLGKPSPEGNNVQVLDISLEGELLILNYVSHDCYDSLGEADSLYSYDSYLKPGQFNISSTKNKFTMVGCDTFAWFKGQRGHESYRTGCMSICDNITDVQNGSCSRNGCCQTSIPDGLSAIDLTLGSFNNYSEIWEFNPCGYAFIVEESNFNFSSNDLRDLKSKTELPMVFDWALDKETCQVDVNDQTNNACKGNSTCNKRITGWGYLCNCSEGYQGNPYLEPGCQDIIECENSILNKCENPETCINTQGNYTCSCPMWYHGDGKIDGQRCIPNRLQMIHVAMGQKNCKFSNLYLKLVVAFQCASNVEHLENLVFIFFYSKVLELIYSSLKYCLISLINICIGIALVVLVAGSTWLYWALKKRRFVKLKKKYFQQNGGSELRQQLSGQGSTERIKFFTSEELEKATKNYDESNIIGRGGFGTVYKGTLTDGRIVAIKKSKMVERIQGKGFINEVGILSQINHRHVIQLLGCCLETQVPLLVYEFINNGTLSDHIHDENKASAIMWETRLRIAIQTAEALYYLHCVASTPIVHRDVKSSNILLDEEYNAKMCDFGASRLVPLDQNQLSTAVQGTPGYLDPESLQTNRVTEKSDVYSFGVVLVELLTGKKALFFDRPKEQRILTIFFLFPLKDDSLFQVLEDCIVNNGNHKQILKVAQLAQRCLSINGEDRPTMKEVMLELEMIRMIGENAEQNPEENTYLLGESYAHYYLGGGESSIATHSMTGSFLLPI* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1774 868 Gene3D Transferase(Phosphotransferase) domain 1 624 843 - -
Vvi18g1774 868 CDD STKc_IRAK 554 819 - -
Vvi18g1774 868 SMART serkin_6 548 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1774 868 ProSitePatterns Protein kinases ATP-binding region signature. 554 577 IPR017441 GO:0005524
Vvi18g1774 868 Pfam Protein kinase domain 548 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1774 868 CDD RNase_HI_RT_Ty1 1 79 - -
Vvi18g1774 868 SUPERFAMILY EGF/Laminin 366 402 - -
Vvi18g1774 868 CDD EGF_CA 366 402 - -
Vvi18g1774 868 ProSiteProfiles EGF-like domain profile. 366 411 IPR000742 -
Vvi18g1774 868 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 384 395 IPR000152 -
Vvi18g1774 868 FunFam Fibrillin 2 361 406 - -
Vvi18g1774 868 SMART egf_5 318 365 IPR000742 -
Vvi18g1774 868 SMART egf_5 369 411 IPR000742 -
Vvi18g1774 868 Gene3D Phosphorylase Kinase; domain 1 511 623 - -
Vvi18g1774 868 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 89 830 IPR045274 GO:0007166
Vvi18g1774 868 ProSiteProfiles Protein kinase domain profile. 548 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1774 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 669 681 IPR008271 GO:0004672|GO:0006468
Vvi18g1774 868 ProSiteProfiles EGF-like domain profile. 322 365 IPR000742 -
Vvi18g1774 868 FunFam Wall-associated receptor kinase 2 519 623 - -
Vvi18g1774 868 FunFam Wall-associated receptor kinase 2 624 839 - -
Vvi18g1774 868 Gene3D Plasmodium vivax P25 domain 309 417 - -
Vvi18g1774 868 SMART egfca_6 366 411 IPR001881 GO:0005509
Vvi18g1774 868 SUPERFAMILY Protein kinase-like (PK-like) 530 821 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1774 Vvi-Chr18 24251670 24258728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1774 97 868 Receptor kinase-like Gene Family AT1G21250 38.071 5.79e-171 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi18g1774 Pkinase 1.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1774 - - vvi:100259679 1242.25