Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1773 ATGGGCTATTTTTGGAGGGTTTTGAAAATGAGCCTTATTATTAGGTTGATGTTTGTTGCAGCAACAGCAGCTGCTCAAGAAGCCAAGCCTGGCTGCCAAGAGAGCTGTGGCAACATCAGTATCCCATACCCTTTCGGCACCAGCCCCGAGTGTTACATTGCTGAAGAGTTTCTCATCACCTGCAACACTACCAATTATAGTCCTCCACAAGCATTCTTAACCAGAAGTAATATTCAAGTGCTAGAAATATTGCTCCAGGGTCAGCTGCGAGTCTCGGGTTGGATCGGCTATGATTGTTACAACTCTAGTAACCACAATAGCTGGCTTGAACTCTCTAAATTCACCATTTCCACTACTCAAAACAAGTTAACCGCTGTTGGCTGCGACACCATTGCACTAGTTACGGGTTATCGTGGGCAAAATTACACCACTGGCTGCGTGTCACTATGCGATAGCGTCGATGATGTCATCAATGGGTCTTGTTCCGGAATCGGTTGCTGCCAAACCTTCATTCCTAGGGGGGCAAGGTCTTATGACATCGAACTTGCCAGCATTAACAAATACCAACAGGTTCTAGACTTCAATCCTTGCAGTTACGCCTTTGTGGCTGAGGATGGTGTCTTCAACTTCTCATCCCTCGACCTTCTTGACCTAAGGGGTAGACAGAAGTTTCCTCTGGTGCTTGATTGGGCTATCGGAAACAAAACTTGCCAGGAAGCAGAAATGGACGCAGCAAATTACGCATGCAAGGAGAACACACAATGTCATGACTCCATCAGTCGCCCAGGCTATGGCTGCAGTTGCTCTGACGGCTACCAAGGCAATCCTTACCTCGGCTGTCAAGATATAGATGAGTGTTCGACATTAAGCCCTTGTAATGGAACATGCCAGAATCTACCTGGTACTTTTAATTGCTCTTGTCCAAAGGGGTATGAAGGTGATGGAAGAAAAAATGGAACTGGCTGTACTCTCGTTGCTAGTCAATCCCAGAGGTTTCCCTTGATTATCATACTAGGTAAGCATATTATACTATTGACCAGTTCTTGGATATATCTGGGACTAAGGGAAAGAAAGCTGATTAAACGCAAAGAAAAATTCTTCCAGAAAAATGGTGGGCTTATGCTACAACATCTTCTTTCCAAATATGAAGGATGCACAGAAACGACTAAAATATTCACTGCCAAAGACCTTCAGAAAGCAACAGACAACTATCATGAAAGCAGAATCTTAGGCCAAGGAGGACAAGGAACAGTTTATAAGGGAATTTTACCCGACAATAGAGTTGTTGCCATTAAGAAGTCTAAGGTGACAGATCAGAGCCAAGTTGAACAATTCGTTAATGAAGTCCATATTCTCTCCCAAATCAACCATAGAAACGTGGTAAAATTATTGGGATGCTGTTTAGAAACTGAAGTTCCTTTACTGGTGTATGAATTTGTGACCAATGGCACCCTCTCTAGCCATATACATGACACGAAGTGCACATCTTCTCTTTCATGGGAAACTTGTTTGCGGATTGCATCTGAAACCGCGGGGGCCCTTTCATATTTGCACTCTTCTGCTTCAACTCCAATTATTCATAGGGATGTCAAATCTACTAACGTTCTCTTAGACGATAATTTCACGGCCAAAGTATCTGATTTTGGAGCATCGAGGCTTGTTCCTCTAGATCAAACCCAAGTAGCCACGTTGGTGCAAGGAACATTTGGATACTTAGACCCCGAATATTTTCATTCTGGCCAATTGACTGACAAAAGTGATGTTTACAGTTTCGGGGTTCTTTTGGCGGAGTTGCTAACTGGAAAAAAGGTAATTTGCTTTGACAGGCCTGAGAAAGAGAGACATTTAGTAAGGTTATTTCGTTCTGCAGTGAAAGAGGATCGTTTACTTGAAGTTCTTGATAATAAAGTTCTGAATGAGGAACATGTTCAATATTTTATGGAGGTTGCAATGTTAGCAAAAAGGTGTTTAGAAGTGAAGGGACAAGAAAGGCCTACTATGAAGGAAGTTGCAATGGAATTAGAGAGAGTACTAAAACTGATAGAGAAACACCCATGGGTAGAAGGTCATGATTGGAATTTAGAAGAGACTCAGTCCCTACTGAATGAATCTTTAAAGGCTGCGTATGGTTGTGATAGTAGCAACACAACAGGGTATGATAGTTTGAAGAGTGAAGTTAAATTGAATATTGATAGTGGTCGTTAA 2205 0.4236 MGYFWRVLKMSLIIRLMFVAATAAAQEAKPGCQESCGNISIPYPFGTSPECYIAEEFLITCNTTNYSPPQAFLTRSNIQVLEILLQGQLRVSGWIGYDCYNSSNHNSWLELSKFTISTTQNKLTAVGCDTIALVTGYRGQNYTTGCVSLCDSVDDVINGSCSGIGCCQTFIPRGARSYDIELASINKYQQVLDFNPCSYAFVAEDGVFNFSSLDLLDLRGRQKFPLVLDWAIGNKTCQEAEMDAANYACKENTQCHDSISRPGYGCSCSDGYQGNPYLGCQDIDECSTLSPCNGTCQNLPGTFNCSCPKGYEGDGRKNGTGCTLVASQSQRFPLIIILGKHIILLTSSWIYLGLRERKLIKRKEKFFQKNGGLMLQHLLSKYEGCTETTKIFTAKDLQKATDNYHESRILGQGGQGTVYKGILPDNRVVAIKKSKVTDQSQVEQFVNEVHILSQINHRNVVKLLGCCLETEVPLLVYEFVTNGTLSSHIHDTKCTSSLSWETCLRIASETAGALSYLHSSASTPIIHRDVKSTNVLLDDNFTAKVSDFGASRLVPLDQTQVATLVQGTFGYLDPEYFHSGQLTDKSDVYSFGVLLAELLTGKKVICFDRPEKERHLVRLFRSAVKEDRLLEVLDNKVLNEEHVQYFMEVAMLAKRCLEVKGQERPTMKEVAMELERVLKLIEKHPWVEGHDWNLEETQSLLNESLKAAYGCDSSNTTGYDSLKSEVKLNIDSGR* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1773 734 ProSiteProfiles EGF-like domain profile. 282 314 IPR000742 -
Vvi18g1773 734 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 678 IPR045274 GO:0007166
Vvi18g1773 734 Gene3D Laminin 286 326 - -
Vvi18g1773 734 Gene3D Laminin 235 285 - -
Vvi18g1773 734 SUPERFAMILY Protein kinase-like (PK-like) 388 699 IPR011009 -
Vvi18g1773 734 ProSitePatterns EGF-like domain signature 2. 266 280 IPR000742 -
Vvi18g1773 734 Pfam Calcium-binding EGF domain 282 318 IPR001881 GO:0005509
Vvi18g1773 734 FunFam Low-density lipoprotein receptor isoform 1 241 327 - -
Vvi18g1773 734 ProSiteProfiles EGF-like domain profile. 241 281 IPR000742 -
Vvi18g1773 734 Gene3D Transferase(Phosphotransferase) domain 1 480 689 - -
Vvi18g1773 734 ProSiteProfiles Protein kinase domain profile. 404 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1773 734 SMART egf_5 285 323 IPR000742 -
Vvi18g1773 734 SMART egf_5 236 281 IPR000742 -
Vvi18g1773 734 ProSitePatterns Serine/Threonine protein kinases active-site signature. 525 537 IPR008271 GO:0004672|GO:0006468
Vvi18g1773 734 Gene3D Phosphorylase Kinase; domain 1 372 479 - -
Vvi18g1773 734 FunFam Wall-associated receptor kinase 2 374 479 - -
Vvi18g1773 734 SMART serkin_6 404 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1773 734 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 296 307 IPR000152 -
Vvi18g1773 734 Pfam Wall-associated receptor kinase galacturonan-binding 32 89 IPR025287 GO:0030247
Vvi18g1773 734 CDD STKc_IRAK 410 676 - -
Vvi18g1773 734 SMART egfca_6 282 323 IPR001881 GO:0005509
Vvi18g1773 734 FunFam Wall-associated receptor kinase 2 480 698 - -
Vvi18g1773 734 Pfam Protein kinase domain 404 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1773 734 ProSitePatterns Calcium-binding EGF-like domain signature. 282 305 IPR018097 GO:0005509
Vvi18g1773 734 SUPERFAMILY EGF/Laminin 282 316 - -
Vvi18g1773 734 CDD EGF_CA 282 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1773 Vvi-Chr18 24227998 24230642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1773 12 734 Receptor kinase-like Gene Family AT1G21230 47.919 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi18g1773 Pkinase 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1773 - - vvi:100247712 1474.14