Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1766 ATGGTAACTTTCTTCACACCCACAACCTCCACTGCTCTCCATGACCTCACTGCTTCTCCACAATTGAACCTCACTTGTCCTCTACTGAACCTCCATTGCTACTATTACTCTTCCTTGGCGTCAAGATCACTACTAGCAACAACCACGAGTCTGTTGGCTCACCCATGTATGTGCCTTACTGGTGGTAGGTCTGAGGCAAATTATATTGAGGATATTACTCATCTTCTTGAAAAGTTAAATACTATCAGACTGAGTTGCTCTCAACACCTCATTGAAATTCCAGACATCTCAATTAGTGCGCCCAATCTGGAGAAACTAATTTTTGATGGTTGTTCAAGTTTGCTTGAGGTTCACCCATCTATTGGAAAGCTGAACAAGCTTATTTTATTGAATTTGAAAAACTGCAAAAAGCTTGTTTGTTTTCCTTGCATCATCAACATGAAAGCGCTTCAAATTCTTAATTTCTCTGGCTGCTCAGGGCTCAAGAAGTTTCCAAATATTCAAGGTAACATGGAAAATTTATTGGATCTTTATTTAGCTTCAATTGCTATTGAGGAACTTCCCTCCTCAATTGGGCATCTCACTGGACTTGTTTTATTGGATCTGAAATGGTGCAAAAATCTTAAGAGTCTTCCCACAAGTATTTGTAAGTTGAAATCCCTTGAATATCTCTTTCTTTCTGGCTGTTCAAAACTTGAAAGTTTTCCAGAAATGATGGAGAATATGGACAATTTGAAAGAGCTTCTTTTAGATGGGACACCTATCGAAGTGCTACCCTCGTCAATTGAACGTCTAAAAGTCCTCATTTTATTGAATCTGAGGAAATGCAAAAACCTTGTGAGTCTTTCAAAGAAACCTCCAAGTGTTGATATATCCAGGATTGGAATTCCTGAGTGGATCTGGCATCAGAATGCGGGATCTTCTATAAAAATAGAGCTACCTACAGACTGGTATAATGATGACTTCTTGGGATTTGCTTTCTTCTCTGTTCTTGAACATCTCCCTGAGAGAATTATATGTCGTTTAAATTCTGATGTTTTTTATTATGGAGACTTGAAAGACTTCGGTCATGATTTCCATTGGAAAGGCAACATTGTTGGGTCAGAACATGTCTGGCTGGGTTATCAACCATGTTCCCAGTTGAGGTTGTTTCAATTCAATGACCCCAATGACTGGAATCGCATTGAGATTTCTTTTGAAGCAGCCCAAAGATTCATCTCAAGTGCATCCAATGTGGTGAAGAAGTGTGGGATATGTTTTATATATGCAGAAGACCTTGAAGGAATCCATCTACAAAATAGAAAACAGCTGAAGAGAGGGGGATGTAATGTAGTCGAGAGAAGCAGTGACAGAGAAGGACTCAATGGAGGTGGAACCTGA 1380 0.3935 MVTFFTPTTSTALHDLTASPQLNLTCPLLNLHCYYYSSLASRSLLATTTSLLAHPCMCLTGGRSEANYIEDITHLLEKLNTIRLSCSQHLIEIPDISISAPNLEKLIFDGCSSLLEVHPSIGKLNKLILLNLKNCKKLVCFPCIINMKALQILNFSGCSGLKKFPNIQGNMENLLDLYLASIAIEELPSSIGHLTGLVLLDLKWCKNLKSLPTSICKLKSLEYLFLSGCSKLESFPEMMENMDNLKELLLDGTPIEVLPSSIERLKVLILLNLRKCKNLVSLSKKPPSVDISRIGIPEWIWHQNAGSSIKIELPTDWYNDDFLGFAFFSVLEHLPERIICRLNSDVFYYGDLKDFGHDFHWKGNIVGSEHVWLGYQPCSQLRLFQFNDPNDWNRIEISFEAAQRFISSASNVVKKCGICFIYAEDLEGIHLQNRKQLKRGGCNVVERSSDREGLNGGGT* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1766 459 Pfam C-JID domain 295 427 IPR045344 -
Vvi18g1766 459 Gene3D Ribonuclease Inhibitor 29 311 IPR032675 -
Vvi18g1766 459 PANTHER LEUCINE-RICH REPEAT-CONTAINING 150 282 - -
Vvi18g1766 459 SUPERFAMILY L domain-like 29 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1766 Vvi-Chr18 24074978 24083704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1766 197 282 WRKY Transcription Factor Family AT4G12020 47.674 1.21e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1766 - - vri:117905630 376.326