Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1753 ATGAAAGCGCTTGAAATTCTTAATTTCTCTGGCTGCTCAGGGCTTAAGAAGTTTCCAGATATTCGAGGTAACATGGACCATTTATTGGAGCTTCATTTGGCTTCAACTGCTATCGAGGAACTTCCCTCCTCAATTGGGCATATCACTAGACTTGTTTTATTGGATCTGAAAAGGTGCAAAAATCTTAAGAGTCTTCCCACGAGTATTTGTAGGTTGAAATCCCTTGAATATCTGTTTCTTTCTGGCTGTTCAAAACTAGAGAATTTTCCAGAAGTAATGGTGGATATGGAAAACTTGAAAGAGCTTCTTTTAGATGGAACATCTATAGAAGGGCTACCCTCATCAATTGACCGTCTAAAAGGCCTCGTTTTATTGAATATGAGGAAATGCCAAAACCTTGTGAGTCTTCCAAAAGGCATGTGTAAATTGACATCTCTTGAAACACTCATTGTCTCTGGTTGTTCACAATTGAACAATTTGCCGAGGAACCTCGGGAGCCTGCAACGTCTAGCACAGCTCCATGCAGATGGAACTGCTATAACTCAACCACCTGAGTCAATTGTTCTCTTGAGAAACCTCCAAGTATTGATCTATCCTGGATGTAAAATATTAGCACCTACCTCTTTGGGGTCACTCTTTTCATTCTGGTTAATGCATAGAAACAGTTCAAATGGGGTCGGTTTGCGCTTGCCTTCTAGTTTTTTTAGTTTCAGGTCCTTCACAAATTTAGATCTAAGTGACCTCAAACTAATAGAAGGAGCAATCCCCAATGATATTTGCTCCTTAATCTCATTGAAGAAATTAGATCTAAGCAGAAATAATTTTCTAAGTATACCTGCTGGCATCAGTCAACTTACAAATCTAAAAGACCTCAGATTGGGGCATTGCCAGAGTCTCATAATAATTCCAGAGCTTCCACCAAGTATCCGAGACGTAGATGCACACAATTGCACTGCCCTTTTTCCAACCTCATCCAGTGTATGCACATTGCAGGGGTTACAGTTCCTATTCTATAATTGTTCCAAACCAGTTGAGGACCAATCCAGTGATCAAAAGAGAAATGCATTACAAAGATTTCCACATAATGACGCGTCTTCCTCTGCTTCTGTTTCCTCTGTAACTACCTCACCTGTTGTGAGGCAGAAATTGCTTGAAAATATTGCATTTAGTATTGTTTTTCCTGGCAGTGGAATTCCCGAGTGGATCTGGCATCAGAATGTGGGATCGTTTATAAAAATAGAGCTGCCTACAGATTGGTACAATGATGACTTCTTAGGATTTGTTCTCTGCTCTATTCTTGAACATCTCCCTGAGAGAATTATATGTCGATTGAATTCTGATGTTTTTTATTATGGAGACTTCAAAGACATTGGTCATGATTTCCATTGGAAAGGAGACATTCTTGGGTCAGAACACGTCTGGTTGGGTTATCAACCATGTTCCCAGTTGAGGTTGTTTCAATTCAATGACCCCAATGACTGGAATTACATTGAGATTTCTTTTGAAGCAGCCCACAGATTCAACTCAAGTGCATCCAATGTGGTGAAGAAGTGTGGGGTATGTCTTATATATGCAGAAGATCTTGAAGGAATCCATCTACAAAATAGAAAACAACTTAAGAGTAGGGGATGTAATGTAGTCGAGAGAAGCAGTGACAGAGATGGACTCCACGGAAGTGGAATGGACTCTAGTTCTAGTGGTAGCAGTCAGGGGGCCTCTAACAGTCCCACGCTCAAGCTCAAGCGCAAACGCCCTCAAGAATGA 1764 0.4065 MKALEILNFSGCSGLKKFPDIRGNMDHLLELHLASTAIEELPSSIGHITRLVLLDLKRCKNLKSLPTSICRLKSLEYLFLSGCSKLENFPEVMVDMENLKELLLDGTSIEGLPSSIDRLKGLVLLNMRKCQNLVSLPKGMCKLTSLETLIVSGCSQLNNLPRNLGSLQRLAQLHADGTAITQPPESIVLLRNLQVLIYPGCKILAPTSLGSLFSFWLMHRNSSNGVGLRLPSSFFSFRSFTNLDLSDLKLIEGAIPNDICSLISLKKLDLSRNNFLSIPAGISQLTNLKDLRLGHCQSLIIIPELPPSIRDVDAHNCTALFPTSSSVCTLQGLQFLFYNCSKPVEDQSSDQKRNALQRFPHNDASSSASVSSVTTSPVVRQKLLENIAFSIVFPGSGIPEWIWHQNVGSFIKIELPTDWYNDDFLGFVLCSILEHLPERIICRLNSDVFYYGDFKDIGHDFHWKGDILGSEHVWLGYQPCSQLRLFQFNDPNDWNYIEISFEAAHRFNSSASNVVKKCGVCLIYAEDLEGIHLQNRKQLKSRGCNVVERSSDRDGLHGSGMDSSSSGSSQGASNSPTLKLKRKRPQE* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1753 587 MobiDBLite consensus disorder prediction 549 587 - -
Vvi18g1753 587 MobiDBLite consensus disorder prediction 557 579 - -
Vvi18g1753 587 Gene3D Ribonuclease Inhibitor 216 343 IPR032675 -
Vvi18g1753 587 ProSiteProfiles Leucine-rich repeat profile. 264 285 IPR001611 GO:0005515
Vvi18g1753 587 Pfam C-JID domain 393 529 IPR045344 -
Vvi18g1753 587 SMART LRR_typ_2 262 285 IPR003591 -
Vvi18g1753 587 SMART LRR_typ_2 25 48 IPR003591 -
Vvi18g1753 587 SMART LRR_typ_2 96 119 IPR003591 -
Vvi18g1753 587 SMART LRR_typ_2 143 167 IPR003591 -
Vvi18g1753 587 Gene3D Ribonuclease Inhibitor 1 215 IPR032675 -
Vvi18g1753 587 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 2 109 - -
Vvi18g1753 587 SUPERFAMILY L domain-like 228 337 - -
Vvi18g1753 587 SUPERFAMILY L domain-like 2 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1753 Vvi-Chr18 23778786 23780549 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1753 50 198 WRKY Transcription Factor Family AT4G12020 42.282 2.66e-20 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1753 - - vvi:100251044 1156.74