Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1752 ATGGATGAGGTTGAATCACCTGTTCGTTTAGATGGGGAAGAGCCTGAAGTTGATTGTCAGATACCACTGAAAGGAATGGTGTTCATGTCAGAGATGGATGCTGAAAAATTTTACTACCACTATGCTGAGAAGATCGGTTTTAAAGTGAGAAAAGGTAAGGTACAAAGGCTATCAAATGGGGACATTAAAAGACGATTTTTTCTTTGTTCATGCGAAGGTTTTCGGGCCAAGAACCAATCCAATCAGACCAAAAACAAGTATCAGAGAAAAGAAACAAGAACAGGTTGCAATGCCCATGTCCAAGTTACACTTGAAAATGGACAATGGGTGATTACAGAACTTCATCTTGAGCATAACCATGACCTTGAAAGCCGTAATCAAAGGTCAAATAAGAACATCCTCGATAGGGATAAATTGCGCTTGGGTGTTTTTTCTCGGAATATTCGCTCTAAACATGTATTTGAACCAGTCGAATCTCAAGTAACCGACTCCAAAAGGGCAGAAGAAGAGGGTCTATCCAAGGTCCATACTCCCTCCATCCTTGATGAAGCTGAAGACGTAGATCAAACCATTCGGGATGCTAACAACGCTGCAGGAGTGGTTCATATTATGGCAGCTGAATCATTTGAGGGCCAGAAAACACGACAGGCTGAGGCCTGGAAACCCACAAGCACTACCCAAGCTCTTGAGAAGGGAAAGAAATTACCCCCACTACACCCTAAAAAAGTGTTTATTCCTCCTCAGCCACAAGAGGAAAAGGAGGATACAATGAGCAGTAATCTGCCAGATTGGGTATTCACTCATGGCAACGAAGAGGTTGAGGTAAAGGGCACTGAGGATGTACTACAACACACTGCTAATGATGTGGAGAACATTTCTAATGATGGGATACTAGTGAAAGATAGGGTCTCCGAATTGCCGCCTACTTCAGCTGTTCATGTCTCAATTCCTTTGCCTCAAAGCTTTGTTGAACTTCTTACTCCCTTCTCTCCAAGTCGGGCCCCAGTGCCACTAACCACCCTTACCAGTGCTCCTGAGAAGCCCATCCTATCCTCTTTTTCAACAGTTGGCTCAGACTCATCACCTACCATTATTTCGAGTCATGAACTTCAGGGTAGGAGAGCACCACCCGCAGTCCAAAATCCTACTCTCCCCATCTCAACCATGACCAATGCTAGCACATTGGTGCCGGGAAGCTCAAACCTACAACCTCCTCCCCAAGCCGAGCACCAGGGGATTATAAGGGATGAAGGGTCTATTCCCCAAATAGGCCCACATGCTCTGGCAGTAAGTTTGGCATGGATCAGGGAAACCAGTATTCAAGTTCAAGGACCTGGGTTCTCTCCTGCAGGCTATTCAATTTTGGAGCAAATATTTACCAAGTATGGGGACATAACTGCTGACTGCTGCTTTACAGCGCCCCAGTTTCGAGCCCAGTTTCTAGCCTCCATAGTGAAGATTGTGCAACTGATGCAGCAGCACACTGCCCGAGAACTATCAGATGCAGATATCTCCTTTATTTGTAGTACATTGAGCGATTTGGAGAGGGCACAGGTTAAGGTTGATTGGTTAAGAACTCAATTTGTTACTGTGGGGCCTCTGATTCACTATGCACAGGCTGAGGCCAAGAGGGCCATGATGCTCACTCGCTTGAGTGCAATGAAAGTTGAAATGGCACAGCTAGAGCATGAGCTGGATCAATCTGAGGCCATCTTGCGAGGCTTGAAAGATCAAATGCCTGACTGGCTTGGAATTGAGGATAAGCTTGGCAAGGGATTATTGTAG 1785 0.4555 MDEVESPVRLDGEEPEVDCQIPLKGMVFMSEMDAEKFYYHYAEKIGFKVRKGKVQRLSNGDIKRRFFLCSCEGFRAKNQSNQTKNKYQRKETRTGCNAHVQVTLENGQWVITELHLEHNHDLESRNQRSNKNILDRDKLRLGVFSRNIRSKHVFEPVESQVTDSKRAEEEGLSKVHTPSILDEAEDVDQTIRDANNAAGVVHIMAAESFEGQKTRQAEAWKPTSTTQALEKGKKLPPLHPKKVFIPPQPQEEKEDTMSSNLPDWVFTHGNEEVEVKGTEDVLQHTANDVENISNDGILVKDRVSELPPTSAVHVSIPLPQSFVELLTPFSPSRAPVPLTTLTSAPEKPILSSFSTVGSDSSPTIISSHELQGRRAPPAVQNPTLPISTMTNASTLVPGSSNLQPPPQAEHQGIIRDEGSIPQIGPHALAVSLAWIRETSIQVQGPGFSPAGYSILEQIFTKYGDITADCCFTAPQFRAQFLASIVKIVQLMQQHTARELSDADISFICSTLSDLERAQVKVDWLRTQFVTVGPLIHYAQAEAKRAMMLTRLSAMKVEMAQLEHELDQSEAILRGLKDQMPDWLGIEDKLGKGLL* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1752 594 Coils Coil 551 578 - -
Vvi18g1752 594 Pfam Arabidopsis phospholipase-like protein (PEARLI 4) 453 579 IPR007942 -
Vvi18g1752 594 MobiDBLite consensus disorder prediction 390 407 - -
Vvi18g1752 594 MobiDBLite consensus disorder prediction 213 241 - -
Vvi18g1752 594 Pfam FAR1 DNA-binding domain 36 122 IPR004330 -
Vvi18g1752 594 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 5 133 - -
Vvi18g1752 594 MobiDBLite consensus disorder prediction 390 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1752 Vvi-Chr18 23755966 23757922 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi18g1752 PEARLI-4 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1752 - - vvi:104882714 1180.24