Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1750 ATGAATAGACTCAGATTACTTAAAGTTTTTAATTTTTCGGGCATTGGAAAAGAAGGCTATAAAGAGCCCCTTTCTGTATCTTTTGAATTTCCTTCTTATGAGTTAAGATATCTCTATTGGCATGGATACCCTTTTGGGTCTCTGCCATCCAAATTTCATTCAGAGAACCTCATTGAGCTGAACATGTGTTATAGCTATATGAGAGAACTTTGGAAGGGAAATGAGGTTCTTGATAATTTAAATACTATCGAACTCAGTAACTCTCAACATCTCATCCATTTGCCAAACTTCTCAAGCATGCCAAATCTAGAGAGACTAGTTCTTGAAGGTTGTACAAGTTTTCTTGAGGTTGACCCATCTATTGAAGTTCTAAACAAGCTTATTTTCTTGAATCTGAAAAACTGCAAAAAACTAAGGAGTTTTCCAAGAAGTATTAAGTTGGAATGCCTTAAATATCTGTCTCTTTCTGGGTGTTCAGATCTCAAGAATTTTCCAGAAATTCAAGGCAATATGCAACATTTGTCTGAGCTTTATTTAGATGGGACAGCAATTAGTGAATTACCTTTCTCCATTGGGTATCTCACAGGACTCATTCTGTTAGATTTGGAAAATTGCAAAAGGCTTAAGTCTCTTCCAAGTAGCATTTGTAAGTTGAAATCCCTTGAGACTCTCATTCTCTCTGCTTGCTCAAAACTAGAGAGTTTTCCTGAAATCATGGAGAACATGGAACATTTAAAAAAGCTTCTTTTGGATGGAACTGCCTTAAAACAGCTGCACCCATCAATTGAACATCTAAATGGCCTTGTTTCTCTGAACCTGAGAGATTGCAAAAACCTTGCAACTCTTCCTTGCAGCATTGGTAACTTGAAATCTCTTGAGACACTTATTGTTTCTGGTTGTTCAAAGCTCCAACAATTGCCAGAGAACCTGGGTAGTTTGCAATGTTTAGTGAAGCTTCAGGCAGATGGAACACTCGTAAGGCAACCACCTTCCTCAATTGTTCTTTTAAGAAATCTTGAAATATTGTCGTTTGGGGGATGTAAAGGACTTGCATCTAACTCATGGAGTTCACTCTTCTCATTCTGGTTGTTGCCAAGAAAAAGTTCAGACACCATTGGTTTGCAATTGCCTTCTTTGTCGGGTTTGTGCTCCTTAAGAGAACTAGATATAAGTGACTGCAATCTAATGGAGGGAGCAGTGCCCTTTGATATCTGCAACTTATCCTCATTGGAAACATTAAATCTAAGCAGAAACAACTTTTTCAGCTTACCTGCAGGCATTAGTAAGCTTTCAAAACTAAGATTCCTCTCCTTGAACCACTGCAAGAGTCTCTTACAAATTCCCGAGCTCCCATCAAGTATAATAGAAGTAAATGCACAATATTGTTCATCCCTTAACACTATATTAACCCCATCTAGTGTCTGCAATAACCAGCCTGTTTGCCGTTGGCTAGTATTTACACTCCCAAATTGTTTCAATCTGGATGCTGAAAACCCATGCAGTAATGATATGGCAATTATATCACCCAGAATGCAGATTAATTTTCTTCCAGATTTTGGGTTTAGCATTTTTCTTCCTGGAAGTGAAATTCCAGACTGGATCTCGAATCAGAATCTCGGATCTGAAGTGACAATAGAGCTGCCTCCTCATTGGTTTGAAAGTAACTTCTTAGGATTTGCTGTATGCTGTGTTTTTGCATTTGAGGACATAGCCCCCAATGGATGCAGTTCCCAACTTCTGTGTCAATTGCAATCTGATGAATCTCATTTTAGAGGCATTGGTCATATTTTGCATTCAATCGATTGTGAAGGCAATAGTGAAGACAGACTCAAGTCACATCACATGTGGCTAGCATACAAGCCCCGTGGACGACTTCGGATCTCCTATGGTGATTGCCCCAATAGATGGAGGCATGCTAAGGCTTCATTTGGCTTCATTAGCTGTTGTCCAAGCAACATGGTGAGAAAGTGTGGGATCCATCTTATATACGCTCAAGATCATGAAGAGAGAAACTCAACCATGATCCACCACAGCTCTTCTGGGAATTTCAGTGACCTCAAATCAGCAGATTCCAGTGTGGGTGCAAGTGGAAGTGGCCTCTGTTGCTCTGTGGTCCATTCAAGTAATTGGTGGGGATACTAG 2142 0.3959 MNRLRLLKVFNFSGIGKEGYKEPLSVSFEFPSYELRYLYWHGYPFGSLPSKFHSENLIELNMCYSYMRELWKGNEVLDNLNTIELSNSQHLIHLPNFSSMPNLERLVLEGCTSFLEVDPSIEVLNKLIFLNLKNCKKLRSFPRSIKLECLKYLSLSGCSDLKNFPEIQGNMQHLSELYLDGTAISELPFSIGYLTGLILLDLENCKRLKSLPSSICKLKSLETLILSACSKLESFPEIMENMEHLKKLLLDGTALKQLHPSIEHLNGLVSLNLRDCKNLATLPCSIGNLKSLETLIVSGCSKLQQLPENLGSLQCLVKLQADGTLVRQPPSSIVLLRNLEILSFGGCKGLASNSWSSLFSFWLLPRKSSDTIGLQLPSLSGLCSLRELDISDCNLMEGAVPFDICNLSSLETLNLSRNNFFSLPAGISKLSKLRFLSLNHCKSLLQIPELPSSIIEVNAQYCSSLNTILTPSSVCNNQPVCRWLVFTLPNCFNLDAENPCSNDMAIISPRMQINFLPDFGFSIFLPGSEIPDWISNQNLGSEVTIELPPHWFESNFLGFAVCCVFAFEDIAPNGCSSQLLCQLQSDESHFRGIGHILHSIDCEGNSEDRLKSHHMWLAYKPRGRLRISYGDCPNRWRHAKASFGFISCCPSNMVRKCGIHLIYAQDHEERNSTMIHHSSSGNFSDLKSADSSVGASGSGLCCSVVHSSNWWGY* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1750 713 SUPERFAMILY L domain-like 29 361 - -
Vvi18g1750 713 Gene3D Ribonuclease Inhibitor 2 163 IPR032675 -
Vvi18g1750 713 ProSiteProfiles Leucine-rich repeat profile. 409 431 IPR001611 GO:0005515
Vvi18g1750 713 Gene3D Ribonuclease Inhibitor 358 499 IPR032675 -
Vvi18g1750 713 Gene3D Ribonuclease Inhibitor 164 357 IPR032675 -
Vvi18g1750 713 SMART LRR_typ_2 289 313 IPR003591 -
Vvi18g1750 713 SMART LRR_typ_2 242 265 IPR003591 -
Vvi18g1750 713 SMART LRR_typ_2 407 430 IPR003591 -
Vvi18g1750 713 SMART LRR_typ_2 171 194 IPR003591 -
Vvi18g1750 713 Pfam C-JID domain 525 668 IPR045344 -
Vvi18g1750 713 SUPERFAMILY L domain-like 376 468 - -
Vvi18g1750 713 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 166 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1750 Vvi-Chr18 23696791 23699132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1750 208 480 WRKY Transcription Factor Family AT4G12020 28.622 6.79e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1750 - - vvi:100264833 1443.71