Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1749 ATGTTTTTTGTGGTTTGTACTTTGTTGGCTCACTCATGTATGTGCCTTACTGGTGGCAGGTCTGAGTCAGAAGTTGTTAATGATATTACTCGCACTATTTTGGCAAGATTTACTCGGAAACATTTACATGTTGACAAAAACCTCGTTGGGATGGATGATCGTTTGAATGAAGTTATTCCACAAATGATAGATCTATCATCAAATGAGGTTCGCATGATTGGGATCTATGGACTTGGAGGAATTGGTAAAACAACCGTTGCCAAAGTTGTTTATAATCGAATTGCCCCTCTTTTCATGATTACTAGCTTTATTGCTAATGTCAGAGAGGATTCCAAAAGTAGGGGTTTACTTCATTTACAAAAACAACTCCTTCATGAGATCTTGCCAAGCCGGAAGAACTTTATAAGCAATGTTGATGAAGGGATCCATATGATACAAGACAGGTTATGCTTTAAAAGTGTTCTTCTCATTCTTGATGATGTTGACACTTTGGACCAACTAGAAGGCTTGGCTGGTGATTGCAATTGGTTTGGTCCTGGAAGTAGAATTATTGTAACAACTAGAGATAGGCATTTGTTGGATGTGCATAAAATGGATGCATTTTATGAGGTTAAGAAATTAGATCAAATGGAAGCTATTGAGCTCTTTAGTCAACACGCATTTGAACAGAAGCATCCCAAAGAAGATTATGAAACACTTTCAAACTCTATGGTGCGTTGCGTTGATGGTCTTCCTTTAGGCCTTAAAGTTTTGGGTCGTTTCCTATTTGGCAAGACAATACTTGAATGGAAAAGTGAATTGCAAAAACTAAAACAGGAACCTAACCAAGAAATTCAAGGTGTGCTCAAGAGAAGTTATGATGAATTAGATCTCACACAAAAGGATATATTCCTAGATGTTGCTTGCTTCTTTAATGGAGAAGATAAAGATCATGTTACAAGAATCCTAGATGCTTGCAACTTCTATGCAGAGAGTGGAATACGAGTCCTCGGTGATAAATGCCTCATAACTATTTTTGACAACAAGATATTGATGCATGATTTGTTACAACAAATGGGACGATACATTGTTCGACAAGATTATCCTAACTACCCTGAAAAATGGAGCAGGTTGTGCTATCCTGACGACGTAAATCGTGTATTGATCAGAAAATCGGGAACAGAGGCAATTGAGGGCATACTCTTCGACTTGTCTATACCAAAGCGTAAGCGGATAGACATTACTACTAAATCCTTTGAGATGATGACAAGACTTAGGTTGCTCAAAATCTATTGGGCTCATGGATCTATTTCTATAAGGGAGGATAATAAAGTAAAGTTGTCCAAAGACTTTGAATTCCCCTCTTATGAGCTAAGATATCTCTACTGGCATGGATATCCTTTGGAATCTTTGCCTTCAAGTTTTTATGCTGAGGACCTCATTGAACTTGACATGTGTTACAGCAGCTTAAAACAACTTTGGGAAAGCGACGAGCCTCTTGAAAAGTTAAATACTATCAGAGTTAGTTTCTCTCAGCACCTCATGGAAATTCCAGACTTCTCAGTTAGGGCTCCAAATCTGGAAAAACTAATTCTTGATGGTTGTTCAAGTTTGCTTGAGGTTCATCCATCTATTGGAAGGCTGAAGAAGATTATTGTATTGAATCTAAAAAACTGCAAACAGCTTAGCAGTTTTCCAAGCATCACTGACATGGAAGCACTTGAAATTCTTAATTTTGCTGGCTGCTCAGAGCTCAAGAAGTTTCCGGATATTCAATGTAATATGGAACATTTATTGAAGCTTTATTTATCATCAACTGCTATAGAGGAACTTCCATCTTCAATCGGGCAGCATATCACTGGACTTGTTTTATTGGATCTGAAAAGGTGCAAAAATCTTACGAGTCTTCCCACATGTATTTTTAAGTTGAAATCCCTTGAATATCTCTTTCTGTCTGGCTGTTCAAAATTGGAGAATTTTCCAGAAATAATGGAGGACATGGAAAATTTAAAAGAGCTTCTTTTAGATGGAACATCCATAGAAGTGCTACCCTCTTCAATTGAACGTCTAAAAGGACTTGTTCTATTGAATCTGAGGAAATGCAAAAAGCTTGTGAGTCTTCCAGACAGCATGTGTAATTTGAGATCCCTTCAAACAATCATTGTCTCTGGTTGTTCACAACTAGACCAATTGCCTAAGAATGTTGGGAGCCTGCAACATCTAGTGCAGCTCCATGCTGATGGAACTGCTATAAGACAACCACCTGACTCAATTGTTCTTTTGAGAGGCCTCCGAGTGTTGATCTATCCTGGATGTAAAATATTACCATCTAGCTCATTGAGTTCACTCTTTTCATTCTGGTTGTTGCATGGAAGAGGTTCAAATGGGATTGGTTTGCGCTTGCCTTCTTTTCCATGTTTAAGCTCCTTGACAAATTTAAACCAAAGCAGTTGCAATCCAAGCAGAAACAATTTTCTAAGCATACCTACCAGCATCAGTGCACTTACTAACCTGAGAGACCTTTGGTTGGGGCAGTGCCAGAATCTTACAGAAATTCCAGAGCTTCCACCAAGTGTCCCAGATATCAATTCACGTGATTGCACATCCCTTTCATTAAGTTCATCCAGTATAAGCATGTTGCAGTGGCTGCAGTTCCTATTCTATTATTGCTTGAAGCCAGTTGAGGAGCAATTTAATGATGATAAGAGGGATGCATTACAAAGATTTCCTGATAATTTAGTGTCTTTTTCTTGTTCTGAGCCCTCTCCATCTAATTTCGCTGTGGTGAAGCAGAAATTTTTTGAAAATGTTGCATTTAGCATGATTCTTCCTGGAAGTGGAATTCCCAAGTGGATCTGGCATCGGAATATGGGATCTTTTGTAAAAGTAAAGCTACCTACGGATTGGTATGATGATGACTTTTTGGGATTTGCTGTCTGCTCTGTTCTTGAACATGTCCCTGATAGAATTGTATGCCATTTGAGTCCTGACACTCTTGATTATGGAGAATTGAGAGACTTCGGTCATGATTTCCATTGCAAAGGTAGCGATGTCAGTTCAGAGCATGTCTGGTTGGGTTATCAACCTTGTGCTCAGCTGAGGATGTTTCAAGTGAATGACCCGAATGAGTGGAGTCACATGGAGATTTCTTTTGAAGCAACCCATAGACTCAGCTCAAGAGCATCAAATATGGTGAAAGAATGTGGGGTACGTCTTATATATGCAGAAGATCTTGAAAGTATACAATGCAGCCCTCTTCTTGGGAGTTTGGGTGACTCTGGATCAAGAGTAGGAGGCAATATAGTTGAGAGAAGCAGTGACGGGGCAGGGCCCAGTGGAAGTGGAAGTGGGCACAGTTCTGTTGGCAGCAGTCAGCATTCCAGGAATGATCCCTTGCTGAAGGTCAAGCGCAAATATTTCCCAGAATGA 3408 0.3944 MFFVVCTLLAHSCMCLTGGRSESEVVNDITRTILARFTRKHLHVDKNLVGMDDRLNEVIPQMIDLSSNEVRMIGIYGLGGIGKTTVAKVVYNRIAPLFMITSFIANVREDSKSRGLLHLQKQLLHEILPSRKNFISNVDEGIHMIQDRLCFKSVLLILDDVDTLDQLEGLAGDCNWFGPGSRIIVTTRDRHLLDVHKMDAFYEVKKLDQMEAIELFSQHAFEQKHPKEDYETLSNSMVRCVDGLPLGLKVLGRFLFGKTILEWKSELQKLKQEPNQEIQGVLKRSYDELDLTQKDIFLDVACFFNGEDKDHVTRILDACNFYAESGIRVLGDKCLITIFDNKILMHDLLQQMGRYIVRQDYPNYPEKWSRLCYPDDVNRVLIRKSGTEAIEGILFDLSIPKRKRIDITTKSFEMMTRLRLLKIYWAHGSISIREDNKVKLSKDFEFPSYELRYLYWHGYPLESLPSSFYAEDLIELDMCYSSLKQLWESDEPLEKLNTIRVSFSQHLMEIPDFSVRAPNLEKLILDGCSSLLEVHPSIGRLKKIIVLNLKNCKQLSSFPSITDMEALEILNFAGCSELKKFPDIQCNMEHLLKLYLSSTAIEELPSSIGQHITGLVLLDLKRCKNLTSLPTCIFKLKSLEYLFLSGCSKLENFPEIMEDMENLKELLLDGTSIEVLPSSIERLKGLVLLNLRKCKKLVSLPDSMCNLRSLQTIIVSGCSQLDQLPKNVGSLQHLVQLHADGTAIRQPPDSIVLLRGLRVLIYPGCKILPSSSLSSLFSFWLLHGRGSNGIGLRLPSFPCLSSLTNLNQSSCNPSRNNFLSIPTSISALTNLRDLWLGQCQNLTEIPELPPSVPDINSRDCTSLSLSSSSISMLQWLQFLFYYCLKPVEEQFNDDKRDALQRFPDNLVSFSCSEPSPSNFAVVKQKFFENVAFSMILPGSGIPKWIWHRNMGSFVKVKLPTDWYDDDFLGFAVCSVLEHVPDRIVCHLSPDTLDYGELRDFGHDFHCKGSDVSSEHVWLGYQPCAQLRMFQVNDPNEWSHMEISFEATHRLSSRASNMVKECGVRLIYAEDLESIQCSPLLGSLGDSGSRVGGNIVERSSDGAGPSGSGSGHSSVGSSQHSRNDPLLKVKRKYFPE* 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1749 1135 MobiDBLite consensus disorder prediction 1100 1122 - -
Vvi18g1749 1135 MobiDBLite consensus disorder prediction 1090 1135 - -
Vvi18g1749 1135 Pfam NB-ARC domain 55 289 IPR002182 GO:0043531
Vvi18g1749 1135 Gene3D - 206 290 IPR042197 -
Vvi18g1749 1135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 299 IPR027417 -
Vvi18g1749 1135 SUPERFAMILY L domain-like 345 780 - -
Vvi18g1749 1135 PRINTS Disease resistance protein signature 148 162 - -
Vvi18g1749 1135 PRINTS Disease resistance protein signature 610 626 - -
Vvi18g1749 1135 PRINTS Disease resistance protein signature 72 87 - -
Vvi18g1749 1135 PRINTS Disease resistance protein signature 241 255 - -
Vvi18g1749 1135 Pfam C-JID domain 936 1072 IPR045344 -
Vvi18g1749 1135 Gene3D - 27 200 IPR027417 -
Vvi18g1749 1135 Gene3D Ribonuclease Inhibitor 700 892 IPR032675 -
Vvi18g1749 1135 SMART AAA_5 69 349 IPR003593 GO:0016887
Vvi18g1749 1135 SMART LRR_typ_2 660 683 IPR003591 -
Vvi18g1749 1135 SMART LRR_typ_2 588 611 IPR003591 -
Vvi18g1749 1135 Gene3D Ribonuclease Inhibitor 395 562 IPR032675 -
Vvi18g1749 1135 Gene3D Ribonuclease Inhibitor 563 699 IPR032675 -
Vvi18g1749 1135 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 585 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1749 Vvi-Chr18 23683147 23686804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1749 20 703 WRKY Transcription Factor Family AT4G12020 37.733 1.28e-117 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1749 - - vvi:100259650 2200.63