Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1748 ATGGAGTCTTTAAACAATAATCGAAGTGGGCAGAGCCAGGAAGAAGCTTCACTCAACCTCGTCACTCCTTTTCAAAGTCAATCTCAGCAGCTGGGACATGGGTCTGATGACCCAGACCCAGACCGCCATGGTCCATACATGGGCTCCATCTCAATCCAACCTACTGCTTCTACATCCTCTAAGCCTGCGTCCTCTTCTGTCAAGAGGTCCACCAAGGACCGCCACACCAAGGTCGACGGCAGGGGACGGCGCATCCGTATGCCAGCTATCTGTGCCGCGAGGGTTTTTCAGCTGACTAGAGAATTGGGCCACAAGTCTGATGGTGAAACTATAGAGTGGCTTTTGCAGCAAGCCGAGCCGGCCATTGTGGCGGCCACTGGAACCGGCACGATTCCGGCGAACTTTTCGACTCTCAACGTATCTCTCCGCAGCAGCGGCTCCACCATCTCGGCGCCACCCTCGAAGTCGGCTCCCCACTCGTTTCATGGTGGTTTAGGCCTCTTTGACGACGGCGGCGGCGATCCAAGCCGGAGAATCTTGGGGTTTCATCATCAGCTGTATCCTCATCTAGGAACCGGCGGTGCAACCTCGTCTTCGCTAACAAAGCCTGCGGCGCCCGGGCCTCAAGATCACGAACAGGGTTCTTCTCCGGCGGCGACGCACTGTTCAGCTCGACCTGCTCCGGCCATGTGGGCAGTTGCACCTGCCACCAGCAACGGCGGCAGCGCTTTCTGGATGCTGCCGGTGACTACCAGCGTTAGCACCTCAACCGCCGGAGTTGGGGCCTCGGAGCCTCAGATTTGGCCGTTTGCAACGGGCGGAGGGCAGTACAGAGTGAATTTCTCGGGTGGGGTGAGTCCAATCCAACTGGGTCCAATGGTTCTGCAACAGCCACAAGGGTCTCAGCAACTGGGATTGGGACTATCAGATATCAACATGGGAATGCTGAATGCTTATAACAGCAGTAGGGTTGATTTGGGGATGAATTTGGAACAGCATCAGCATCAGAACCAGCCTCCTCAAGGTAGTGAAGACAGTGGAGATGAAGATGCTGCTGAGTCTCAATGA 1068 0.5599 MESLNNNRSGQSQEEASLNLVTPFQSQSQQLGHGSDDPDPDRHGPYMGSISIQPTASTSSKPASSSVKRSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSTLNVSLRSSGSTISAPPSKSAPHSFHGGLGLFDDGGGDPSRRILGFHHQLYPHLGTGGATSSSLTKPAAPGPQDHEQGSSPAATHCSARPAPAMWAVAPATSNGGSAFWMLPVTTSVSTSTAGVGASEPQIWPFATGGGQYRVNFSGGVSPIQLGPMVLQQPQGSQQLGLGLSDINMGMLNAYNSSRVDLGMNLEQHQHQNQPPQGSEDSGDEDAAESQ* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1748 355 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 321 IPR005333 GO:0003700
Vvi18g1748 355 MobiDBLite consensus disorder prediction 1 84 - -
Vvi18g1748 355 MobiDBLite consensus disorder prediction 192 223 - -
Vvi18g1748 355 MobiDBLite consensus disorder prediction 146 168 - -
Vvi18g1748 355 MobiDBLite consensus disorder prediction 1 34 - -
Vvi18g1748 355 Pfam TCP family transcription factor 70 162 IPR017887 -
Vvi18g1748 355 ProSiteProfiles TCP domain profile. 71 125 IPR017887 -
Vvi18g1748 355 MobiDBLite consensus disorder prediction 50 66 - -
Vvi18g1748 355 MobiDBLite consensus disorder prediction 67 84 - -
Vvi18g1748 355 MobiDBLite consensus disorder prediction 331 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1748 Vvi-Chr18 23608849 23609916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1748 63 349 TCP Transcription Factor Family AT1G72010 47.633 6.39e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vvi18g1748 TCP 1.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1748 - - vvi:100266605 691.804