Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1742 ATGGAGCTGAGCGTAGTTCCGTACGGACGCAGCGCCAAAATGGAGGTAGATGATGTAGAGGAGGATGAAGCCGCCGAGAATAAACCAATGGTCATGAACCCCAAAGCAACCGCCGTAAAGCCCAGGTACAGAGAGTGCATGAGAAACCATGCCGCCTCCATCGGTGGCCATGCCAGCGACGGCTGCGGCGAGTTCATGCCCTCCGGCGGTGGCGGCGGAGGTGATGCGGCTTCGCTGACGTGCGCGGCGTGCGGGTGCCACCGCAACTTCCATCGACGGGAAGTACCCGGTGCAGCGCACCTTCATCACCACCTCATGCACCCCGGACCCCCTCATGCTCATCCCATGTTGCTCTATAACACCACTCCCAGCCCGAAGAATGCTTCCGTGCATGCGCTTCCTCATAAGTTCCTCGGTGTTCCCGCATTTGGTGGCCTTGATCATCATCATCATCATCATCAGGATGATGGGGAGAGGCAGTATGATCGACGGTCGGAGACGCCGGAGAGGGGGGATGTGCAGATAGCCACGATGATGACGACGACGAAGAACAAGAGATTCAGGACCAAGTTCACGCAAGAGCAGAAAGAGCGAATGCTGGAGTTGGCCGAGAGGCTGGGTTGGAGGATACAGAAGCAGGACGACGTCGTTTTGTCCCAGTTCTGCTCCGAGCTCGGGATTAAGCGTAATGTCCTGAAGGTGTGGATGCACAACAACAAGAATGCACACCGCCGCAGAGAACCTCCACCCGAGTCTCCTCCTCCTCCTCCGCCACCACCTCCACCGTCCATGGCGCCGCCCCAAGCTGCCGGAGTGTGA 819 0.5861 MELSVVPYGRSAKMEVDDVEEDEAAENKPMVMNPKATAVKPRYRECMRNHAASIGGHASDGCGEFMPSGGGGGGDAASLTCAACGCHRNFHRREVPGAAHLHHHLMHPGPPHAHPMLLYNTTPSPKNASVHALPHKFLGVPAFGGLDHHHHHHQDDGERQYDRRSETPERGDVQIATMMTTTKNKRFRTKFTQEQKERMLELAERLGWRIQKQDDVVLSQFCSELGIKRNVLKVWMHNNKNAHRRREPPPESPPPPPPPPPPSMAPPQAAGV* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1742 272 Pfam ZF-HD protein dimerisation region 42 95 IPR006456 -
Vvi18g1742 272 MobiDBLite consensus disorder prediction 144 170 - -
Vvi18g1742 272 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 43 94 IPR006456 -
Vvi18g1742 272 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 29 241 - -
Vvi18g1742 272 SUPERFAMILY Homeodomain-like 178 245 IPR009057 -
Vvi18g1742 272 MobiDBLite consensus disorder prediction 251 272 - -
Vvi18g1742 272 MobiDBLite consensus disorder prediction 238 272 - -
Vvi18g1742 272 NCBIfam homeobox domain, ZF-HD class 185 241 IPR006455 -
Vvi18g1742 272 Gene3D - 174 244 - -
Vvi18g1742 272 MobiDBLite consensus disorder prediction 145 170 - -
Vvi18g1742 272 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 42 95 IPR006456 -
Vvi18g1742 272 FunFam Zinc-finger homeodomain protein 2 172 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1742 Vvi-Chr18 23508908 23509726 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1742 42 240 ZF-HD Transcription Factor Family AT1G14440 46.000 4.55e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vvi18g1742 ZF-HD_dimer 7.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1742 - - vvi:100251158 449.514