Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1737 ATGGGTAGAAAGCCTTGCTGCGACAAAGCCCACACCAACCGAGGTGCTTGGACCAAAGAAGAAGACGACCGCCTCATCGAATACATCCGTATGAATGGCCATGGATCCTGGCGATCTCTTCCCAAAGCCGCTGTGTTTTCTCGGCTACCAAACGGAGGATTGAGATTTAGAGTTTGGTTTATTGTTGGTCTGATAGGATTGCTCCGATGCGGCAAGAGTTGTCGGCTTCGGTGGATAAACTACCTTCGGCCTGATGTCAAGCGCGGAAACTTCACCATAGATGAAGACGAACTCATCATCAAACTTCACAAATTGCTAGGAAACAAGTGGTCGCTGATCGCGGGGCGATTGCCCGGAAGAACAGACAACGAGATCAAGAACCACTGGAACACTCACATCAGACGGAGGCTCCTCAGGGGCGGAATCGATCCAAAGACTCATCAGCCAACCAAACCAACCACCACCGAAGAAGGCAATTGCAGCAGCGCTTTGACCGCCGCCACAATCGACGGCGCTGAGAAGCCACCACAGCCGCCACCAGAGCAGCAACCAAATCAATTCCCGGACGGAGAGGAAGAGCACGTCAACCTCGAGCTCACCCTCGCGCTTTTTCCGACTCCATCGGAGTCTACTGCGGAATCGAAGCTACGGCGGACTACTGCGCCAGATGGTCCCGATGAGGATGCAGGTGCTTGCGTGGGTTGCTGCCAGCTGAGCAATGAAGATTCCCATCAATGCCAAAAATGCTATAATCAAGACTTTAATTTGACTTTGTAA 777 0.5225 MGRKPCCDKAHTNRGAWTKEEDDRLIEYIRMNGHGSWRSLPKAAVFSRLPNGGLRFRVWFIVGLIGLLRCGKSCRLRWINYLRPDVKRGNFTIDEDELIIKLHKLLGNKWSLIAGRLPGRTDNEIKNHWNTHIRRRLLRGGIDPKTHQPTKPTTTEEGNCSSALTAATIDGAEKPPQPPPEQQPNQFPDGEEEHVNLELTLALFPTPSESTAESKLRRTTAPDGPDEDAGACVGCCQLSNEDSHQCQKCYNQDFNLTL* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1737 258 ProSiteProfiles Myb-like domain profile. 9 82 IPR001005 -
Vvi18g1737 258 Gene3D - 14 87 - -
Vvi18g1737 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Vvi18g1737 258 FunFam MYB transcription factor 89 150 - -
Vvi18g1737 258 MobiDBLite consensus disorder prediction 170 189 - -
Vvi18g1737 258 CDD SANT 90 133 IPR001005 -
Vvi18g1737 258 MobiDBLite consensus disorder prediction 138 160 - -
Vvi18g1737 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 82 IPR017930 -
Vvi18g1737 258 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Vvi18g1737 258 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 202 - -
Vvi18g1737 258 Pfam Myb-like DNA-binding domain 88 132 IPR001005 -
Vvi18g1737 258 Pfam Myb-like DNA-binding domain 14 82 IPR001005 -
Vvi18g1737 258 Gene3D - 90 161 - -
Vvi18g1737 258 CDD SANT 16 82 IPR001005 -
Vvi18g1737 258 SMART sant 13 84 IPR001005 -
Vvi18g1737 258 SMART sant 87 135 IPR001005 -
Vvi18g1737 258 MobiDBLite consensus disorder prediction 204 228 - -
Vvi18g1737 258 SUPERFAMILY Homeodomain-like 13 129 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1737 Vvi-Chr18 23420049 23420963 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1737 1 197 MYB Transcription Factor Family AT4G38620 56.716 3.63e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi18g1737 Myb_DNA-binding 6.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1737 K09422 - vvi:100259749 473.781