Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1736 ATGGGTAGAAAGCCTTGCTGCGACAAAGCCCACACCAACAGAGGTTCCTGGAGCAAAGAGGAAGACGACCGCCTCATCCACTACATCCGTCTTAATGGCCACGGATTTTGGCGATCTCTTCCCAAAGCCGCTGGATTACTCCGATGCGGCAAGAGTTGTCGGCTTCGGTGGATAAACTACCTTCGGCCTGATGTCAAGCGCGGAAACTTCGCCATAGATGAAGACGAACTCATCATCAAACTTCACAAATTGCTAGGAAACAAGTGGTCGCTGATCGCGGGGCGATTGCCCGGAAGAACAGACAACGAGATCAAAAACCACTGGAACACTCACATCAGGCGGAAGCTCATCAGTGGCGGAATCAATCCAAAGACTCATCAGCCAACCAAACCAATCACCACCGAAGAAACCAATTGCAGCAGCGCTTTGACCATCACCACCACAACCGACAACACTGAGAAGCCACAACAGCCGCCACCGAAGCAGCAACCAAATCAATTCCCCGGGGAAGAGGAAGAGCACATCAACCTCGAGCTCACCCTCGCGCTTTTTCCGACTCCATCGGAGTCTACTGCGGAATCGAAGCTGCGGCGGACTACTACGCCAGATGGCCCCGATGAAGCTTTCTTGGTCACCAAACACTACTCAAATTTAATCCCAAAAAGAGGGGAAAAAAACAATCAACACTATCTAGAAACATGA 702 0.51 MGRKPCCDKAHTNRGSWSKEEDDRLIHYIRLNGHGFWRSLPKAAGLLRCGKSCRLRWINYLRPDVKRGNFAIDEDELIIKLHKLLGNKWSLIAGRLPGRTDNEIKNHWNTHIRRKLISGGINPKTHQPTKPITTEETNCSSALTITTTTDNTEKPQQPPPKQQPNQFPGEEEEHINLELTLALFPTPSESTAESKLRRTTTPDGPDEAFLVTKHYSNLIPKRGEKNNQHYLET* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1736 233 Gene3D - 69 142 - -
Vvi18g1736 233 SMART sant 66 114 IPR001005 -
Vvi18g1736 233 SMART sant 13 63 IPR001005 -
Vvi18g1736 233 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi18g1736 233 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 180 - -
Vvi18g1736 233 CDD SANT 16 61 IPR001005 -
Vvi18g1736 233 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Vvi18g1736 233 MobiDBLite consensus disorder prediction 185 208 - -
Vvi18g1736 233 FunFam Transcription factor MYB10 14 66 - -
Vvi18g1736 233 Gene3D - 14 66 - -
Vvi18g1736 233 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi18g1736 233 CDD SANT 73 112 IPR001005 -
Vvi18g1736 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi18g1736 233 MobiDBLite consensus disorder prediction 149 171 - -
Vvi18g1736 233 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vvi18g1736 233 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi18g1736 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi18g1736 233 FunFam Transcription factor MYB7 69 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1736 Vvi-Chr18 23406742 23417429 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1736 1 173 MYB Transcription Factor Family AT4G38620 63.636 3.54e-78 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi18g1736 Myb_DNA-binding 6.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1736 K09422 - vvi:100254642 429.869