Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1731 ATGGGTTCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGCTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGATTATGAAAGATCGGTATACTGGTCAACCCAGGGGATTTGGGTTTGTCACCTATGCTGATCCTTCAGTTGTTGACAGTGTCATTGAAGATACACATGTTATTAACGGAAAACAGGTTGAGATTAAAAGAACCATTCCAAAAGGCTCTGGTCAATCGAAGGATTTCAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAGATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGATTATACGCGACCATGAAACCAACCGTTCGCGAGGCTTTGGATTTATAATATTTGAAAGTGAAGAGGTAGTAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAGGTGAGCATACTCCAATGGTCCCCGAGAAATAAGCATGTAATTGAAAACCTGTTTAGAATGGAGTATGCAGCACTGCATTCTCTATTTTCCTTAATACTATGCATGACAAGGTTGTTATCTGCTCATTTTTTAAATATCATTTTATTCAGATTAACCTCTTTAGTGGGTTTGGTTTCAAATTTTAGGTGGAGATCAATACAGGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATGTTTCCGCATTTGGTAGCAACTCTAGGGCTCGTTCTTTCAGTGATGGCTTTGGTGGATTTGGCAGCTCATACGGGAGTTATGACAGTGGGTTTGGAGCTGCTCCATATAGGGCAGCTGGAGGTCTGGGCAGTAGGCTTGGTGGATACGGTGGGTATGGTAGTGATGGTGGGGAGTATGGTGGTGGTTATGGTAGTTTTGGAAGCAGTAACTTAGGAGGTTACAGAGGGGATCCTTCCCTTGGTTATTCTAGTCGCTTTGGACCCTATGGCGGCGGGTTTAGCGGGAGTTATGGTGGAAGTGGTTTAGGTGGATATGGCCAAGGAGGCGAAAGCTACGGAAATTATGGAGGTTCAGGCTATGCTAGTGGTTATGATTCTGGTGCTGGTGCTAGTTATGGTGGAGCAGGCGGTCTGTATGGAAGGGGAGGTTATAGTGGCAGTAGTCGGTACCATCCTTATGCAAGGTAG 1248 0.4431 MGSKLKGNTTHTGDGASPGKIFIGGLAKDTTYAAFNKHFEKYGEITDSVIMKDRYTGQPRGFGFVTYADPSVVDSVIEDTHVINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGLPSTVTEDEFKDFFSKYGKVEEHQIIRDHETNRSRGFGFIIFESEEVVDEILSEGNMIDMAGTQVSILQWSPRNKHVIENLFRMEYAALHSLFSLILCMTRLLSAHFLNIILFRLTSLVGLVSNFRWRSIQVEIKKAEPKKASNPPHVSAFGSNSRARSFSDGFGGFGSSYGSYDSGFGAAPYRAAGGLGSRLGGYGGYGSDGGEYGGGYGSFGSSNLGGYRGDPSLGYSSRFGPYGGGFSGSYGGSGLGGYGQGGESYGNYGGSGYASGYDSGAGASYGGAGGLYGRGGYSGSSRYHPYAR* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1731 415 SUPERFAMILY RNA-binding domain, RBD 95 189 IPR035979 GO:0003676
Vvi18g1731 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 88 IPR000504 GO:0003723
Vvi18g1731 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 173 IPR000504 GO:0003723
Vvi18g1731 415 SUPERFAMILY RNA-binding domain, RBD 15 99 IPR035979 GO:0003676
Vvi18g1731 415 SMART rrm1_1 108 181 IPR000504 GO:0003723
Vvi18g1731 415 SMART rrm1_1 20 91 IPR000504 GO:0003723
Vvi18g1731 415 Gene3D - 19 95 IPR012677 -
Vvi18g1731 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 95 IPR000504 GO:0003723
Vvi18g1731 415 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 9 415 - -
Vvi18g1731 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Vvi18g1731 415 FunFam Heterogeneous nuclear ribonucleoprotein 1 18 100 - -
Vvi18g1731 415 Gene3D - 96 181 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1731 Vvi-Chr18 23328547 23332850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1731 87 211 Eukaryotic Initiation Factors Gene Family AT4G34110 25.658 3.21e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1731 K12741 - vvi:100246013 365.155