Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1730 ATGGCCGGAGCTCCAGAGCATCGGAGTAGGTTTGATCAGGATATCACCCCCCGATCTGCAGGCAGGCATGGTTCCACCGGCTTCCGGCCAGATGTTTCGGGAGCCCAACAATTCCCTTTTCAGGAATATGGTACTTCAGTCAATTGCGAATCTGACAATACCTCCATAGACTGGCTCTACAAGTGCCTGTTTCCACAGGATAATCCTGAAGTGGACAACTTTCAGGAGGGTTATCTCGCTCTATCTGACTTTGCAAATGATGGTCCTGAAATGGACCAAACCTGTAATGAAGATGGTTGTGAGATTAAAACATCTGTTAATGTAAATGAGGAGAAGCCTGAAGATAATGATCAGAAACCGCAAAGTGGGATGATGTTTTCATCTGTGATACAAGCTGAAGAATTTTACAAAGACTATGCCAAGAAAACTGGTTTTACAGTAAGAAAAGGGAAGATACACAAGCAACCAGATGGTACACTGAAATGGCGACGTTTGCTTTGTTCATGTGAAGGTTTCCGGGCCAAGAAGCAGTCCAACCAGGGAACAAAGTATCAGAGATTAGAGACAAGAACAGGTTGTGAAGCCCAGATGCAAGTCACACTTGAAAATGAACAATGGGTGATCACAAACCTTCAGCTTGAGCATAATCACAGCCTGAAAAATTCGAATGGAAGTTCAGATAAGAGTATTCAAGATGCACTAACTAGGCCTTCAGAAAAACTAGAAGGTGCTTTGGAAGCTGACAACGTTTGTCCCAAACACCAATTGAAACAACTGAAACCTCAACCTGTGGACTCCAGAAGGGCAAAAGGAGAGACTTTATTGGCTTCGGCTGAAGCTGAGGACAGAGACAAAACTCTCAGGGATGGTCCAAGGTTCATTGGAAACTCAAGTAGGCTTCTCAAGGAGAACCATAATGAACAACTTTTTGAGGAGGCAACTAAGTTGCAATCAATATTCCATCTGCACCCAAAAAACCAAGGCTACCTTCCACAACAAACACAAGAGGATTCAGTGAGCCGTTATTCGGAACAGATCATCAGTGAAGTAGAGACTCATTGTAATTATGTGCAAAATGCTTCTGACCGGCTCACCATGGAAGAGAGGTCACTGCCGGTTGCCAAAAGCGCTGATGGGGAGTCAACTATTTACTCAGCTCAAATGCCTACCACGAATGATGCGAGTCATTGGTCTAGGGGTAGCGCTGTTAGCATAGCATCATCAACTGTCCCAACTCCTACTCTTCCTATTACGACCATTACTAGCGCTGGCACACCTGCAGCTGGGAGCTCCAGCCCACATCTTCCTTGTCTCCAAGACAAGCGCTCAGGGGCTTCAAGGGATCAGGGAAAACAGTGCGCAAGTTTCGGGGGGGTCAACACCATTGTCCAAGTGGGATCTGGAGTATCTCATACAAGTGAGTCAATTTGGCAGCAAATACTGACCAAGTATGGAGACATAACGGCCAAAAGCACCGTGACATCGCCCGAGTTTGTAGCCTTCGTTAAGCAATCCATTCTGAAGATTGTGGAGCTGATGCATAATAACACTGCCCGTGGCCTGTCTGATGAAAACATCTCCACCATTGGTCGTATATTGGGCGATTTGGAGCGTGTGGAGGTTAAGGTTGATTGGTTAAGAACCCGATTTGTTGCAGTGGGACATTTAATTGACTATGCAAAGGCAAAGGACAACAGGGACATGATTCTTAGGCGCTTCAATGAAAAGAGAGCTCAAGTAGCGCAGCTACAGCTGCATCTAACGCAGCTACAGGGGAAGCTGGATGAAGCAGAGGCCAGTTTACAGGAGCTGCAACACCAAGTACCCGAGTGGCTTACGTTCGAAGATACACTTGGAAAAGGATTATTGTAG 1872 0.4594 MAGAPEHRSRFDQDITPRSAGRHGSTGFRPDVSGAQQFPFQEYGTSVNCESDNTSIDWLYKCLFPQDNPEVDNFQEGYLALSDFANDGPEMDQTCNEDGCEIKTSVNVNEEKPEDNDQKPQSGMMFSSVIQAEEFYKDYAKKTGFTVRKGKIHKQPDGTLKWRRLLCSCEGFRAKKQSNQGTKYQRLETRTGCEAQMQVTLENEQWVITNLQLEHNHSLKNSNGSSDKSIQDALTRPSEKLEGALEADNVCPKHQLKQLKPQPVDSRRAKGETLLASAEAEDRDKTLRDGPRFIGNSSRLLKENHNEQLFEEATKLQSIFHLHPKNQGYLPQQTQEDSVSRYSEQIISEVETHCNYVQNASDRLTMEERSLPVAKSADGESTIYSAQMPTTNDASHWSRGSAVSIASSTVPTPTLPITTITSAGTPAAGSSSPHLPCLQDKRSGASRDQGKQCASFGGVNTIVQVGSGVSHTSESIWQQILTKYGDITAKSTVTSPEFVAFVKQSILKIVELMHNNTARGLSDENISTIGRILGDLERVEVKVDWLRTRFVAVGHLIDYAKAKDNRDMILRRFNEKRAQVAQLQLHLTQLQGKLDEAEASLQELQHQVPEWLTFEDTLGKGLL* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1730 623 MobiDBLite consensus disorder prediction 1 34 - -
Vvi18g1730 623 Pfam FAR1 DNA-binding domain 134 220 IPR004330 -
Vvi18g1730 623 Coils Coil 580 607 - -
Vvi18g1730 623 MobiDBLite consensus disorder prediction 1 17 - -
Vvi18g1730 623 Pfam Arabidopsis phospholipase-like protein (PEARLI 4) 462 608 IPR007942 -
Vvi18g1730 623 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 87 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1730 Vvi-Chr18 23252191 23258744 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi18g1730 PEARLI-4 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1730 - - vvi:100855073 1231.47