Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1726 ATGGATGGGATTAGGAGGAAATCAAGAGATGTTCTCATGGTTGGGATCTTTGGAAGCGCTGGAATAGGGAAGACAACTATTGCCCGAGCTTTGTATGATGAAATTTCTTGTCAATTTGATGGTGCTAGTTTTCTTGCAAATATTCGAGAGGTATCCAAAAAGGATGGCCTATGTTGCTTACAAGAACGACTTTTTTGTGATATCCTATTAGGAGGTCGAAAAGTAATGCTTCTTAGAAGGGACAATTTGATGGAGAGCAAATTTTGTACTAAAAAAGTTCTTATTGTTCTTGATGATGTAAATGATAAGAAACAATTGGAATTATTAGCCGGAAGACATGATTGGTTTGGTAAAGGAAGTAGAATCATTATAACGTGTAGAAATGAACATTTGTTATTACGACATAAAGTGGATGAGTCTTATGAGTTTAAGAAATTAGATGGTCTTGAAGCTCTAGCACTCTTGTGTCACCACGCCCTTACCGAAGAACAATCTCCATTTAAGCGTTTTCTCTTTTTAGATAATATAAGGGCTCGTTGTGAAAATAATCCTTTAAAGCTTAAAGTTGCGGGTTCTTATCTACGTGGCAAGGAAGATGCGAATTGGGAAATTTATGTAAATAGTAAGTTTTTGAAAGTGAGTTATGAGGACCTACTTGAGGAAGAAAAGGATATATTCCTTGATGTTGCATGCTTCTTTCAAGGGGAGTGTGAAGATTTTGTTACAAAAATACTAGAGAAACCTGATTTCTCTGCTAAACAAGGAGTGCAAGTTCTAAGCAATAGGTGCCTCTTAACAATTTCGGAAGGAAAGTTATGGATGGATAATTCAATACAAGAAATGGCCTGGAAAATTGCTAACAAACAGGCACAGATACCAGGCAAACCTTGCCGCTTGTGGGATCATAATAAAATCCTACACGTACTGAAGAGAAACGAGGGGATACATGCATTAATTGAAGGCATATCCTTAGAGCTATCCAAATCAAAAGACAAAAAATTTTCTGGTGAAGCCTTTTCCGAAATGGATGCACTCAGATTGCTAAAGGTCTTCTTGGGTTCTGGATGTGTTAATGACAAAGAGACTTATAAAGTGCATTTTTCTACAGACTTTACGTTTCCTTCATATGATAAGTTAAGGTATCTCCATGGGCATGGATACCAATTAGATTCTTTTCCTTCAAACTTTGAGGCAGAGGAGCTTCTTGAACTCAACATGCCATGTAGCAGCCTAAAACAAATTAAAGGGGATGAGATTCATTTTCCAAATTTAATTGCCCTTGATCTTAGTCACTCTCAACAATTGGAAACCATCTCAAACTTCTCAAGGATGCCAAATTTGGAGAGACTGGTTCTTGAAGGTTGTAGAAGTTTGGTTAAGGTTGACCCATCTATTGTAAATCTGAAAAAGCTTTCTTTGATGAATTTGAAAGGCTGCAAAAGGCTTAAGAGTCTTCCAAAGAGAATTTGTAAATTCAAATTTCTTGAAACTCTTATTCTCACGGGTTGTTCGAGACTTGAGAAATTGCTAGGTGACAGGGAGGAACGGCAAAATTCAGTAAACCTGAAGGCAAGTCGAACTTATAGAAGAGTCATCATTCTACCTCCGGCGCTAAGAATTCTTCACTTGGGGCATTGCAAGAGGTTTCAAGAAATTCTAAAGCTTCCTTCAAGTATTCAAGAAGTAGATGCATACAACTGCATTTCTATGGGAACTTTATCGTGGAACACCAGACTAGAAGCATCCATTTTACAGAGGATCAAGATTAATCCGGAATCTGCATTTTCTATCGTTCTTCCTGGGAATACAATTCCAGACTGTTGGGTCACCCATAAGGTGACGGGATCTTCAGTGACTATGAAGCTGAAAAATCCTGATCGGTACAACGATGACCTCTTGGGATTTGCCGTGTGCCTTGTTTTTGCACCACAGGCTGAAAGGCCTCAGCTAAATCCTGAAATATTGTGTGAATTGAAGAATTTCACATTTTTCTACAGTTGTGGCGAGGACAGTGTAGATGAATTTCCAGAGTCAGATCAAGAATGGGGCAACAACAGTACAGAGCACGTGTGGTTGGCATACCGACCACATGCTCGAGCTGATAGATGTCATCCTAAAGAATGGAATCATATTAAGGCTTCATTTGAAGTCTTTGACTGTGTGGTGAAAAAGTGTGCTATTCGCCTTATATACAAGTAG 2199 0.3847 MDGIRRKSRDVLMVGIFGSAGIGKTTIARALYDEISCQFDGASFLANIREVSKKDGLCCLQERLFCDILLGGRKVMLLRRDNLMESKFCTKKVLIVLDDVNDKKQLELLAGRHDWFGKGSRIIITCRNEHLLLRHKVDESYEFKKLDGLEALALLCHHALTEEQSPFKRFLFLDNIRARCENNPLKLKVAGSYLRGKEDANWEIYVNSKFLKVSYEDLLEEEKDIFLDVACFFQGECEDFVTKILEKPDFSAKQGVQVLSNRCLLTISEGKLWMDNSIQEMAWKIANKQAQIPGKPCRLWDHNKILHVLKRNEGIHALIEGISLELSKSKDKKFSGEAFSEMDALRLLKVFLGSGCVNDKETYKVHFSTDFTFPSYDKLRYLHGHGYQLDSFPSNFEAEELLELNMPCSSLKQIKGDEIHFPNLIALDLSHSQQLETISNFSRMPNLERLVLEGCRSLVKVDPSIVNLKKLSLMNLKGCKRLKSLPKRICKFKFLETLILTGCSRLEKLLGDREERQNSVNLKASRTYRRVIILPPALRILHLGHCKRFQEILKLPSSIQEVDAYNCISMGTLSWNTRLEASILQRIKINPESAFSIVLPGNTIPDCWVTHKVTGSSVTMKLKNPDRYNDDLLGFAVCLVFAPQAERPQLNPEILCELKNFTFFYSCGEDSVDEFPESDQEWGNNSTEHVWLAYRPHARADRCHPKEWNHIKASFEVFDCVVKKCAIRLIYK* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1726 732 PRINTS Disease resistance protein signature 13 28 - -
Vvi18g1726 732 PRINTS Disease resistance protein signature 87 101 - -
Vvi18g1726 732 PRINTS Disease resistance protein signature 466 482 - -
Vvi18g1726 732 PRINTS Disease resistance protein signature 180 194 - -
Vvi18g1726 732 Pfam NB-ARC domain 7 208 IPR002182 GO:0043531
Vvi18g1726 732 SUPERFAMILY L domain-like 375 583 - -
Vvi18g1726 732 Gene3D - 3 140 IPR027417 -
Vvi18g1726 732 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 555 IPR044974 GO:0006952
Vvi18g1726 732 Gene3D Ribonuclease Inhibitor 323 529 IPR032675 -
Vvi18g1726 732 Pfam C-JID domain 599 732 IPR045344 -
Vvi18g1726 732 SUPERFAMILY "Winged helix" DNA-binding domain 210 310 IPR036390 -
Vvi18g1726 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 228 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1726 Vvi-Chr18 23148854 23151487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1726 435 573 WRKY Transcription Factor Family AT5G45050 28.777 3.13e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1726 - - vvi:100855105 1481.85