Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1720 ATGTCGTCACTATTATGTATGGAGTCAAATGATGTTCGAATGATAGGAATACATGGAATTGCTGGAATAGGCAAGACTACCCTCGCCAAAGGAATATACAACCAAATTGCTCATCAATTCGAAGGTGCTAGCTTTCTTTCAAATGTTGCAGAGGTAAAGGAACACCGTGGATCGCTTAAATTACAAAGACAACTTCTAGCAGATATCCTAGGGGAAAAAATTGCACGCATAAGCAACATTGATGAAGGCATTAGCTTGATAAAGAAGACGCTTTGCTCTAGAAAGGTTCTTATCATTCTAGATGATGTTAGTGCTTTGACTCAATTAGAATTCTTGGCAGGGAGCCGTCACTGGTTTGGTTCAGGTAGTAGAATTATCATAACATCGAGAAATAAACATTTACTCGATGTGCTTGAAGTTGATGGATTATATGAGGTTCAGAAATTAAAATCTGAGGAAGCTTTTAAACTGTTTAGTTTGTATGCGTTCGAGGCAGACCATGACGATGGGTTTTGGGAGCTCTCCGGACGTGCATTAAATTACTGTGATGGACTTCCGCTTGCTGTTAAAGTTGTGGGAGGTTACCTGCGTAACAAGACGGAGCTTGAATGGGAAGATGAACTGCTTAAGCTAACAACAGTAGGGCAGATTACAGTCCAATATGTGCTTAGATTAAGTTACGACAGACTGGAACACACAGAAAAGGATCTATTCCTTGATATTGCATGCTTCTTCAGAGGGAAGGACTCAGATTCTGTTGGAAGAATACTTGATAGTTGCAACTTCTCTGCAATTGGAATGAAAGTTCTCAAAGATTGTTCTTTCATTAGTATTTTAGACAACAAGATAGAAATGCATGGTTTGATGCAACAAATGGAATGGGAAATCATTCGGAGAGAATCACCTGGACAACCTGGCCAACGGAGTAGATTGTGGAATCCAGAAGATGTCCATGCTGTGTTGACACAAAAAACGGAAAAGATTTTGAGAATACCAGGTCTGGCTGTTCTTCGAATGTCCAACAAAGCAGTGAATCCACCTAAAGATGAAGGGTGTAGAGGGAGAAACGAGGAGTTTTTCGAGGAAGGGAGAAAGTGA 1098 0.4035 MSSLLCMESNDVRMIGIHGIAGIGKTTLAKGIYNQIAHQFEGASFLSNVAEVKEHRGSLKLQRQLLADILGEKIARISNIDEGISLIKKTLCSRKVLIILDDVSALTQLEFLAGSRHWFGSGSRIIITSRNKHLLDVLEVDGLYEVQKLKSEEAFKLFSLYAFEADHDDGFWELSGRALNYCDGLPLAVKVVGGYLRNKTELEWEDELLKLTTVGQITVQYVLRLSYDRLEHTEKDLFLDIACFFRGKDSDSVGRILDSCNFSAIGMKVLKDCSFISILDNKIEMHGLMQQMEWEIIRRESPGQPGQRSRLWNPEDVHAVLTQKTEKILRIPGLAVLRMSNKAVNPPKDEGCRGRNEEFFEEGRK* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1720 365 Gene3D - 148 231 IPR042197 -
Vvi18g1720 365 MobiDBLite consensus disorder prediction 348 365 - -
Vvi18g1720 365 MobiDBLite consensus disorder prediction 345 365 - -
Vvi18g1720 365 Gene3D - 1 141 IPR027417 -
Vvi18g1720 365 SMART AAA_5 11 153 IPR003593 GO:0016887
Vvi18g1720 365 PRINTS Disease resistance protein signature 14 29 - -
Vvi18g1720 365 PRINTS Disease resistance protein signature 182 196 - -
Vvi18g1720 365 PRINTS Disease resistance protein signature 90 104 - -
Vvi18g1720 365 Pfam NB-ARC domain 7 214 IPR002182 GO:0043531
Vvi18g1720 365 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 325 IPR044974 GO:0006952
Vvi18g1720 365 SUPERFAMILY "Winged helix" DNA-binding domain 219 321 IPR036390 -
Vvi18g1720 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 241 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1720 Vvi-Chr18 23072398 23074190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1720 11 326 WRKY Transcription Factor Family AT5G45050 36.250 6.21e-55 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1720 - - vvi:100263169 646.736