Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1714 ATGCTGGGTGAAAGTTTGTACCCTCTTTTGGATCAGTTGGAGAATGAGATGGCAGTTGAAGCGATAGGCACGCTTCTGGAGGTGGACCAGACTGAGGTTTTGCATCTGTTTGAGTCGCTAGAGGTTTGA 129 0.4806 MLGESLYPLLDQLENEMAVEAIGTLLEVDQTEVLHLFESLEV* 43
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1714 42 Gene3D - 1 42 - -
Vvi18g1714 42 SUPERFAMILY PABC (PABP) domain 1 40 IPR036053 GO:0003723
Vvi18g1714 42 Pfam Poly-adenylate binding protein, unique domain 1 39 IPR002004 GO:0003723
Vvi18g1714 42 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1 42 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1714 Vvi-Chr18 22937012 22937140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1714 1 41 Eukaryotic Initiation Factors Gene Family AT2G23350 68.293 3.14e-14 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1714 K13126 - vvi:109121673 63.5438