Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1710 ATGAGACAGGGAGCGACGAAGGAGAGAGGATCACAGCTGAAGAGGAGCAGCTTGCAAGGTGAGGGACCCACATATAGTACACAGAACAAAGATGGAGAGAGAGAGAAGAGAGATGGTGTAGTTTCAGTGATCTGTTCCGCAAACAAGTTGTCCTGCATTGATTGTGGAGAAACATTTGGGCAGCAAAGTGTTCAGGGCCACACGCAGTGTATTACTGAAGCGGAAAAATACGGCCCCAAGGGACAAGGGAAAGCTTTGAATGGTACCCCAGCAAAGGCCAAAAGTGATTCAAAGCAAAGGCCTGAAGTTGATATAACTGTTGGGTTATCTGAACGTCCTCCATGGTTTTGTAGTCTTTGCAATACAAAGGCTACTAGTAAGCAAGCACTACTACTCCATGTTGATGGGAAGAAGCACCAAGCAAAAGCGCGAGCCTTTCATGCTGCTAATGAACCTAAGCAGAAAGAAGAATCCACTAAAAATGGGAATGTTTCAACAGAAAACATTTCAAAGGATGAATCAATTGGCAATAAAAATGTTGAGGCAAAGATGCAAAATCCACCTCAAATGGCCACTGTGCATGGCAGCTTAGAGACTGAAAATGAAAATTTGGCATCAAAGAAGAAAAGAAAACTTGATGCATCTGATAACAATGGTGATAGGAAAAAGGTTGGAGGTGATGCATCAGGTGAATTAGGCAATGGTGAAGTGATTCAGGTTGAAACGGCAGAAGCACGAGAGCTCCAGCTCACTTCCCCAGCGCACGTTAGCACTTTCCGAGGCGCAGATTAG 792 0.4457 MRQGATKERGSQLKRSSLQGEGPTYSTQNKDGEREKRDGVVSVICSANKLSCIDCGETFGQQSVQGHTQCITEAEKYGPKGQGKALNGTPAKAKSDSKQRPEVDITVGLSERPPWFCSLCNTKATSKQALLLHVDGKKHQAKARAFHAANEPKQKEESTKNGNVSTENISKDESIGNKNVEAKMQNPPQMATVHGSLETENENLASKKKRKLDASDNNGDRKKVGGDASGELGNGEVIQVETAEARELQLTSPAHVSTFRGAD* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1710 263 MobiDBLite consensus disorder prediction 10 27 - -
Vvi18g1710 263 Pfam LYAR-type C2HC zinc finger 50 77 IPR014898 -
Vvi18g1710 263 MobiDBLite consensus disorder prediction 142 237 - -
Vvi18g1710 263 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 11 237 IPR039999 GO:0003677
Vvi18g1710 263 MobiDBLite consensus disorder prediction 201 227 - -
Vvi18g1710 263 Gene3D Classic Zinc Finger 109 157 - -
Vvi18g1710 263 SUPERFAMILY beta-beta-alpha zinc fingers 108 148 IPR036236 -
Vvi18g1710 263 FunFam UBP1-associated proteins 1C 109 152 - -
Vvi18g1710 263 MobiDBLite consensus disorder prediction 1 38 - -
Vvi18g1710 263 Pfam Zinc-finger of C2H2 type 115 139 - -
Vvi18g1710 263 MobiDBLite consensus disorder prediction 161 200 - -
Vvi18g1710 263 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 47 71 - -
Vvi18g1710 263 SMART ZnF_U1_5 112 146 IPR003604 GO:0003676|GO:0008270
Vvi18g1710 263 MobiDBLite consensus disorder prediction 76 102 - -
Vvi18g1710 263 MobiDBLite consensus disorder prediction 142 160 - -
Vvi18g1710 263 SUPERFAMILY beta-beta-alpha zinc fingers 50 78 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1710 Vvi-Chr18 22922051 22922894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1710 44 235 C2H2 Transcription Factor Family AT2G19380 32.258 9.27e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1710 K15263 - vvi:100252615 394.43