Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1699 ATGAAGCCAGTCCGTGAGATGCTGTCTTTCAGTGTGTTCACTCCCTATTATTCTAAGACTCTGCTTTATAGTATGGATGAACTCCAAAAGAAAAATGAGGAGATGGTCAGAGCATCGGGGAAATTAAAGCTACTTGATCGTTTACTCCCAAAACTCCAGAAAGCAGGGCATAGAGTGCTGCTTTACTCACAGATGACTCGCCTTATGGATATTCTAGAAGTCTATCTACAAACGAATGAATTCAAGTATCTGAGACTGGATGGCTCAACAAAGACCGAGGAAGGGGGACCAAGCTAA 297 0.4276 MKPVREMLSFSVFTPYYSKTLLYSMDELQKKNEEMVRASGKLKLLDRLLPKLQKAGHRVLLYSQMTRLMDILEVYLQTNEFKYLRLDGSTKTEEGGPS* 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1699 98 CDD SF2_C_SNF 28 94 - -
Vvi18g1699 98 FunFam Uncharacterized protein 12 95 - -
Vvi18g1699 98 PANTHER SNF2/RAD54 HELICASE FAMILY 26 94 - -
Vvi18g1699 98 Gene3D - 12 95 IPR027417 -
Vvi18g1699 98 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 94 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1699 Vvi-Chr18 22600731 22601027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1699 2 36 Cell Wall Biosynthesis AT3G07160 68.571 2.18e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1699 - - vvi:100264840 111.694