Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1668 ATGGCCAAGAAAAGGGAGGAATTCTTCTTGAAGAATGGAAGCTTGTTATTAGAGAAGCTGGTTTCATCTTTGAATGGCAGGTCCAATCCCATCCGGAACTTCTCTATCAAAGAGCTGGAGCAAGCCACAAACAAATATAATAGCTCTCTAATTTTTGACCGGTGGACGTATTCTGAATGGTACAAGGGTTCTCTTGAAGGCAGATTCGTTTCCGTTAGGAAGTTTCATCCTGTGATTGACGATGCTTTTCTTGAGAGGGTCATCAAGGAAATTACCTTTGCAACACAACTGAGCGCTCACAAGAATGTTTTGAAGCTCTTCGGATGCTGCTTGGAGACCCAGACTCCCGTTCTGGTTTACGAATATCCGGTCAATGGAGTGGTGCCTCTCTATGATGTGATACATCCTTCTACAGATGGAAAAAGTAGGCAGCGTTTGCCATGGAAAAGTAGGTTAAGGATTTCAGGTGACATTGCTCATGTTATTGCATATCTCCACACTGCATTTCCGAGGGCTATCATTCATAGAGAGGTAACGCTTTCATTCTTCTTCTTGGATGAGGATTGTGTTCCCAAACTGTCCAATTTCTTCTTTGCTATAGCTCTTCCTGAGGGGAGAAAATATGTGGTGGATGGAGTGATGGGCATAGAGGGGTTCATAGCACCTGAGTATGAGATGACAGGAATGGTCACAGAGAAAGTAGATGTTTTTAGTTTTGGTAAACTTCTTCTGGAGCTTTTAACTGGCAGGAGGACCATTGATTTTGGGCCTTTGGGTAATGATGGGGAACTTCTTCTTCAGGATTGCATAAAAACATATGTAGAAGACCATGAACTTGATGGTTTTGTGGATGCTAGTATTCTGCCAAGAGGAGGAGAGATCCATGAGGAACTCCAACTCCTAGCAGTAACAAAACTTGCCCTGAGATGCATCATGACTGCTGCTGAGCAGAGGCCAACCATGGTGGAGATTGCAAAAGAACTCAGGCGAATTCAGAGAGGCATCTGCTCAAACGTGACTTTGACACCAACTTCATCAATCTCCCCTACTGCTTCCATGATTCAGATGGCAAACCCTCTAAATCAGTTGATTGATGTGAAATTGGACGTTACAAACTACCCCATATGGAAACGTCAAGTTCAGACTGCAATTAGGGGTTATGGCCTTGAAGGTTTCATCCTCGGGACTCGAGAAGTTCCTCCTGAGCTTATTCAAGTTGAAGACGGCACACAGATGGTGAATCCAGCCTATATTTCCTATCAACAACAAGATCACCTTCTTGCATCATGGATTCTCGCTTCAATGAGTCCAAGCTTCCTGCCACAACTAGTTGGCTGTGATACTGCCCTAGATATCTGGAATACTGTTGGGCACATCTTTACTTCTCAATCCACAGCAAAGATCATGCACTACAAGCATCAACTTCAAATTCTGAAGAAAGGTAGCCTCCCAATGGTCTACAGTACTAAGGAGGCTGAGATTCTACAAACTTAG 1494 0.4371 MAKKREEFFLKNGSLLLEKLVSSLNGRSNPIRNFSIKELEQATNKYNSSLIFDRWTYSEWYKGSLEGRFVSVRKFHPVIDDAFLERVIKEITFATQLSAHKNVLKLFGCCLETQTPVLVYEYPVNGVVPLYDVIHPSTDGKSRQRLPWKSRLRISGDIAHVIAYLHTAFPRAIIHREVTLSFFFLDEDCVPKLSNFFFAIALPEGRKYVVDGVMGIEGFIAPEYEMTGMVTEKVDVFSFGKLLLELLTGRRTIDFGPLGNDGELLLQDCIKTYVEDHELDGFVDASILPRGGEIHEELQLLAVTKLALRCIMTAAEQRPTMVEIAKELRRIQRGICSNVTLTPTSSISPTASMIQMANPLNQLIDVKLDVTNYPIWKRQVQTAIRGYGLEGFILGTREVPPELIQVEDGTQMVNPAYISYQQQDHLLASWILASMSPSFLPQLVGCDTALDIWNTVGHIFTSQSTAKIMHYKHQLQILKKGSLPMVYSTKEAEILQT* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1668 497 SUPERFAMILY Protein kinase-like (PK-like) 36 346 IPR011009 -
Vvi18g1668 497 FunFam Inactive serine/threonine-protein kinase 22 122 - -
Vvi18g1668 497 Gene3D Phosphorylase Kinase; domain 1 21 122 - -
Vvi18g1668 497 ProSiteProfiles Protein kinase domain profile. 46 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1668 497 Gene3D Transferase(Phosphotransferase) domain 1 129 338 - -
Vvi18g1668 497 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 3 332 IPR045274 GO:0007166
Vvi18g1668 497 Pfam Protein tyrosine and serine/threonine kinase 69 328 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1668 Vvi-Chr18 22020373 22023367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1668 1 332 Receptor kinase-like Gene Family AT1G16260 36.527 3.15e-52 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-2 Vvi18g1668 PK_Tyr_Ser-Thr 2.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1668 - - vvi:100259348 993.801