Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1663 ATGCAGACACTAGATTTACATGGTGCTTTTGTGCAGGATTTGAATCAGTGTAGTCAGAATTGCAATGATTCTGCCTACCATGGCAATGGAATTTGTATTGTTCTTCCTGGACATAGTGGAGTTCCAGAGTGGATGATGGGGAGAAGAGCAATAGAGCTTCCGCAGAATTGGCACCAAGATAATGAGTTTTTGGGATTCGCTATATGCTGTGTTTATGTTCCACTTGATGATGAATCTGAGGACATATCAGAAAATGAATCAGACCATAAATCTCAGGATGAATCTGCTCATACATCAGAGAATGAAACAGATGATGAATCTAAGAATGAATCTGCAGCTGAATTATTTTCGGAGGATGTATATTTACCCTCTTGTTGTCTGAAATGTGCTTTGCGTTTCTATGGTGATAATGATCGATCGACGGATATTCACAAATTTGAATCTCATTGTCTTTGCTATGGCCAAGGTAATGATAGTGTATCACGTCAAACGTGGGTGATTTTGTATTCCAAGGAAGCTCTTAAGGAGTGGTATCTCGCTGATGATGGGCACCACCTTTCACCTACATTTGGGGGCTCTTACAATACTTTTAAGAAAGCCTTTAAAGAGGGGAAGTGTGCAGTCCACCTTATATACTCCAAAGACGTTCCACTAAGGACACAGACACGGGATGCGGAGGTTAGAAGATGCAACCTATGCCAACAAAATGGGATATGTCGACAGCGTGGTTGTTTTGAGGACAGTGACATGAAGGAACTACCCATTATAGAGAATCCCTTGGAGCTTGATGGTTTATGTTTGCGGGGTTGCAAATACCTCAAGAGTCTGCCAAGTAGTATTTGCGAGTTCAAATCACTTACAACTCTCTGTTGCGAAGGCTGTTCACAATTGGAGAGCTTTCCAGAAATCCTGGAAGATATGGAAATCTTAAAAAAGCTTGATTTAGGTGGAAGTGCCATAAAAGAGATACCATCATCAATTCAACGTCTGAGAGGGCTTCAAGATCTGAATCTGGCATATTGCAAAAACCTTGTGAATCTTCCGGAAAGTATTTGTAATCTGACATCTCTTAAAACTCTCACTATCAAATCCTGTCCAGAACTCAAAAAATTGCCAGAGAACTTGGGGAGATTGCAATCTCTAGAAATTCTTTATGTTAAGGATTTTGATTCAATGAATTGTCAATTCCCATCTTTGTCGGGTTTGTGCTCCTTGAGAATATTACGACTAATCAACTGCGGTCTAAGGGAAATCCCTAGTGGTATTTGCCACCTAACGTCACTGCAATGTTTAGTTCTCATGGGGAACCAGTTCAGTAGCATACCTGATGGGATCAGTCAACTTCACAAGCTAATCGTTCTTAACTTGAGTCACTGCAAGCTGCTTCAACATATTCCAGAGCCTCCATCGAATTTAAGAACTCTAGTTGCCCATCAATGCACATCCCTGAAAATTTCATCGAGTCTACTCTGGTCTCCTTTTTTTAAATCCGGAATTCAGAAGTTTGTACCTCGAGGTAAAGTACTCGATACTTTTATTCCTGAAAGTAATGGAATTCCAGAGTGGATAAGCCATCAGAAAAAGGGATCCAAAATAACTCTAACACTTCCTCAGAATTGGTACGAAAATGATGACTTCTTGGGCTTTGCTTTGTGCTCTCTTCATGTTCCACTTGATATTGAATGGAGGGATATCGATGAAAGCAGGAATTTCATATGTAAATTGAATTTCAACAACAATCCGTCTTTGGTGGTGCGTGATATCCAGTCTCGACGCCATTGTCAAAGCTGCCGTGATGGAGATGAATCAAATCAATTGTGGTTGATAAAAATTGCCAAGTCAATGATTCCCAACATATATCACTCAAATAAATATAGGACCTTGAACGCTTCATTTAAAAATGACTTCGATACGAAATCAGTGAAAGTGGAGCGGTGTGGGTTCCAGCTTCTATATGCCCAAGATTATGGACACAATCATCTCACAATAGTACAAGGCAGCAGCTCTTCTCATGGGGATTTGGGTGGCCATAGATCAGCTGTACAAGATACCAATGATTGCGACAACCAAGAAGCCACTGAGCACAACCATCCGCCAAATGATACAGTACGTTGA 2115 0.4066 MQTLDLHGAFVQDLNQCSQNCNDSAYHGNGICIVLPGHSGVPEWMMGRRAIELPQNWHQDNEFLGFAICCVYVPLDDESEDISENESDHKSQDESAHTSENETDDESKNESAAELFSEDVYLPSCCLKCALRFYGDNDRSTDIHKFESHCLCYGQGNDSVSRQTWVILYSKEALKEWYLADDGHHLSPTFGGSYNTFKKAFKEGKCAVHLIYSKDVPLRTQTRDAEVRRCNLCQQNGICRQRGCFEDSDMKELPIIENPLELDGLCLRGCKYLKSLPSSICEFKSLTTLCCEGCSQLESFPEILEDMEILKKLDLGGSAIKEIPSSIQRLRGLQDLNLAYCKNLVNLPESICNLTSLKTLTIKSCPELKKLPENLGRLQSLEILYVKDFDSMNCQFPSLSGLCSLRILRLINCGLREIPSGICHLTSLQCLVLMGNQFSSIPDGISQLHKLIVLNLSHCKLLQHIPEPPSNLRTLVAHQCTSLKISSSLLWSPFFKSGIQKFVPRGKVLDTFIPESNGIPEWISHQKKGSKITLTLPQNWYENDDFLGFALCSLHVPLDIEWRDIDESRNFICKLNFNNNPSLVVRDIQSRRHCQSCRDGDESNQLWLIKIAKSMIPNIYHSNKYRTLNASFKNDFDTKSVKVERCGFQLLYAQDYGHNHLTIVQGSSSSHGDLGGHRSAVQDTNDCDNQEATEHNHPPNDTVR* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1663 704 PANTHER LEUCINE-RICH REPEAT-CONTAINING 95 387 - -
Vvi18g1663 704 MobiDBLite consensus disorder prediction 667 704 - -
Vvi18g1663 704 Gene3D Ribonuclease Inhibitor 310 493 IPR032675 -
Vvi18g1663 704 Gene3D Ribonuclease Inhibitor 239 309 IPR032675 -
Vvi18g1663 704 MobiDBLite consensus disorder prediction 81 110 - -
Vvi18g1663 704 Pfam C-JID domain 516 655 IPR045344 -
Vvi18g1663 704 Pfam C-JID domain 42 216 IPR045344 -
Vvi18g1663 704 SMART LRR_typ_2 307 330 IPR003591 -
Vvi18g1663 704 SMART LRR_typ_2 425 448 IPR003591 -
Vvi18g1663 704 SMART LRR_typ_2 402 424 IPR003591 -
Vvi18g1663 704 MobiDBLite consensus disorder prediction 84 110 - -
Vvi18g1663 704 MobiDBLite consensus disorder prediction 688 704 - -
Vvi18g1663 704 SUPERFAMILY L domain-like 257 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1663 Vvi-Chr18 21907397 21909587 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1663 307 475 WRKY Transcription Factor Family AT4G12020 30.409 9.69e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1663 - - vvi:100252633 1441.02