Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1662 ATGCAGACACTAGATTTACATGGTGCTTTTGTGCAGGATTTGAACCAGTGTAGTCAGAATTGCAATGATTCTGCCTACCATGGCAATGGAATTTGTATTGTTCTTCCTGGACATAGTGGAGTTCCAGAGTGGATGATGGAGAGAAGAACAATAGAGCTTCCGCAGAATTGGCACCAAGATAATGAGTTTTTGGGATTTGCTATATGCTGTGTTTATGTTCCACTTGATGATGAATCTGAGGACATATCCGAAAATGAATCAGACCATAAATCTCAGGATGAATCTGCAGCTGAATTATTTTCGGAGGATGTATATTTACCCTCTTGTTGTCTGAAATGTGCTTTGCGTTTCTATGGTGATAATGATCGATCGACGGATTTTCACAAATTTGAATCTCATTGTCTTTGCTATGGCCAAGGTAATGATAGTGTATCACGTCAAACGTGGGTGATTTTGTATTCCAAGGAAGCTCTTAAGGAGTGGTATCTCGCTGATGATGGGCACCACCTTTCACCTACATTTGGGGGCTCTTACAATACTTTTAAGAAAGCCTTTAAAGAGGGGAAGTGTGCAGTCCACCTTATATACTCCAAAGACCTTCCACTAAGGACACAGACACGGGATGCGGAGGTTAGAAGATGCAACCTATGCCAACAAAATGGGATATGTCGACAGCGTGGTTGTTTTGAGGACAGTGACATGAAGGAACTACCCATTATAGAGAATCCCTTGGAGCTTGATGGTTTATGTTTGCGGGGTTGCAAATACCTCAAGAGTCTGCCAAGTAGTATTTGCGAGTTCAAATCACTTACAACTCTCTGTTGCGAAGGCTGTTCACAATTGGAGAGCTTTCCAGAAATCCTGGAAGATATGGAAATCTTAAAAAAGCTTGATTTAGGTGGAAGTGCCATAAAAGAGATACCATCATCAATTCAACGTCTGAGAGGGCTTCAAGATCTGAATCTGGCATATTGCAAAAACCTTGTGAATCTTCCGGAAAGTATTTGTAATCTGACATCTCTTAAAACTCTCACTATCAAATCCTGTCCAGAACTCAAAAAATTGCCAGAGAACTTGGGGAGATTGCAATCTCTAGAAATTCTTTATGTTAAGGATTTTGATTCAATGAATTGTCAATTGCCATCTTTGTCGGGTTTGTGCTCCTTGAGAATATTACGACTAATCAACTGCGGTCTAAGGGAAATCCCTAGTGGTATTTGCCACCTAACGTCACTGCAATGTTTAGTTCTCATGGGGAACCAGTTCAGTAGCAAACCTGATGGGATCAGTCAACTTCACAAGCTAATCGTTCTTAACTTGAGTCACTGCAAGCTGCTTCAACATATTCCAGAGCCTCCATCGAATTTAATAACTCTAGTTGCCCATCAATGCACATCCCTGAAAATTTCATCGAGTCTACTCTGGTCTCCTTTTTTTAAATCCGGAATTCAGAAGTTTGTACCTGGAGTTAAATTACTCGATACTTTTATTCCTGAAAGTAATGGAATTCCAGAGTGGATAAGCCATCAGAAAAAGGGATCCAAAATAACTCTAACACTTCCTCAGAATTGGTACGAAAATGATGACTTCTTGGGCTTTGCTTTGTGCTCTCTTCATGTTCCACTTGATATTGAATGGAGGGATATCGATGAAAGCAGGAATTTCATATGTAAATTGAATTTCAACAACAATCCGTCTTTGGTGGTGCGTGATATCCAGTCTCGACGCCATTGTCAAATCTGCCGTGATGGAGATGAATCAAATCAATTGTGGTTGATAAAAATTGCCAAGTCAATGATTCCCAACATATATCACTCAAATAAATATAGGACCTTGAACGCTTCATTTAAAAATGACTTCGATACGAAATCAGTGAAAGTGGAGCGGTGTGGGTTCCAGCTTCTATATGCCCAAGATTGTGGACAGAATCATCTCACAATAGTACAAGGCAGCAGCTCTTCTCATGGGGATTTGGGTGGCCATAGATCAGCTGTACAAGATACCAATGATTGCGACAACCAAGAAGCCACTGAGCACAACCATCCGCCAAATGATACAACTGATCTCAGTCACACTTCTATCACTAATGCTCTCATCTTTTATTGTCTGAGGCTATCTAAGGGAAAAAGCTTAGCTGTTTGGTTAAAGATCCAACATTTCGTAAAGAGAATTCAAAGCAAGAATTAG 2187 0.4033 MQTLDLHGAFVQDLNQCSQNCNDSAYHGNGICIVLPGHSGVPEWMMERRTIELPQNWHQDNEFLGFAICCVYVPLDDESEDISENESDHKSQDESAAELFSEDVYLPSCCLKCALRFYGDNDRSTDFHKFESHCLCYGQGNDSVSRQTWVILYSKEALKEWYLADDGHHLSPTFGGSYNTFKKAFKEGKCAVHLIYSKDLPLRTQTRDAEVRRCNLCQQNGICRQRGCFEDSDMKELPIIENPLELDGLCLRGCKYLKSLPSSICEFKSLTTLCCEGCSQLESFPEILEDMEILKKLDLGGSAIKEIPSSIQRLRGLQDLNLAYCKNLVNLPESICNLTSLKTLTIKSCPELKKLPENLGRLQSLEILYVKDFDSMNCQLPSLSGLCSLRILRLINCGLREIPSGICHLTSLQCLVLMGNQFSSKPDGISQLHKLIVLNLSHCKLLQHIPEPPSNLITLVAHQCTSLKISSSLLWSPFFKSGIQKFVPGVKLLDTFIPESNGIPEWISHQKKGSKITLTLPQNWYENDDFLGFALCSLHVPLDIEWRDIDESRNFICKLNFNNNPSLVVRDIQSRRHCQICRDGDESNQLWLIKIAKSMIPNIYHSNKYRTLNASFKNDFDTKSVKVERCGFQLLYAQDCGQNHLTIVQGSSSSHGDLGGHRSAVQDTNDCDNQEATEHNHPPNDTTDLSHTSITNALIFYCLRLSKGKSLAVWLKIQHFVKRIQSKN* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1662 728 Gene3D Ribonuclease Inhibitor 292 378 IPR032675 -
Vvi18g1662 728 Gene3D Ribonuclease Inhibitor 214 291 IPR032675 -
Vvi18g1662 728 MobiDBLite consensus disorder prediction 651 688 - -
Vvi18g1662 728 PANTHER LEUCINE-RICH REPEAT-CONTAINING 115 371 - -
Vvi18g1662 728 Pfam C-JID domain 500 639 IPR045344 -
Vvi18g1662 728 Pfam C-JID domain 41 199 IPR045344 -
Vvi18g1662 728 SUPERFAMILY L domain-like 241 460 - -
Vvi18g1662 728 Gene3D Ribonuclease Inhibitor 379 697 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1662 Vvi-Chr18 21853993 21856504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1662 249 424 WRKY Transcription Factor Family AT4G12020 35.227 1.20e-18 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1662 - - vvi:100268040 1404.81