Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1653 ATGCAGTACTTGGACTCTCTTGAAAGTCTTCATTTATATGGTTGCTCAAACTTGGAGGAATTCCCGGAGATTAGATGGAGTTGTAGGAAAGGCTTAAAGAATATTTATTTGAATAGTACTCCTATCAAAGAATTGCCCTTCTCAATAGATGATCTCACCTTAGTTCGGATATTATCAATGGGTGACTGCAAAAACTTGAGAAGTCTTCCGGGCAGCATTTTTAGTTTGAAATCCCTTCAAACACTCAATCTCATCGGCTGTTCAAACCTAGAGGCTTTTCCAGAAATCACAGAAGACATGGCAAATTTGGAACATCTTTCTTTATCAGAAACAGCTATAAAAGAGTTGCCATCAACCATTCAACATCTAAAACAGCTCAAATCGTTGCGTGTGGGTGGTTGTTCAAGACTAGAGAAATTTCCCAAGAACCTGGAGAGTCTGAAAGATTCCTTAAGACATCTAGATCTTAGCAATAGCAATCTGATGGATGGAGCAATCCCCAATGATGTATGGTGCCTATCCTTGCTGGAAACTTTAGTTCTAAGAAGAAACAATTTTCGTCACATGCCTGCTGGAATAACTCAACTTTGTAAGCTGACACGGCTAATAATCAATCACTGCAAGATGCTTGAAGGTATTCCAGAGCTTCCATTAAGTCTAAAACGTATAGAAGCACGTGGTTGCACAAGCCTGGAAACTTTATCGAGTTCATCAAGTCCACTATGGTCTTCTCTTCTCCAGTGGTTCAAGTCAGCAAAATTTCAGGTATGA 771 0.3956 MQYLDSLESLHLYGCSNLEEFPEIRWSCRKGLKNIYLNSTPIKELPFSIDDLTLVRILSMGDCKNLRSLPGSIFSLKSLQTLNLIGCSNLEAFPEITEDMANLEHLSLSETAIKELPSTIQHLKQLKSLRVGGCSRLEKFPKNLESLKDSLRHLDLSNSNLMDGAIPNDVWCLSLLETLVLRRNNFRHMPAGITQLCKLTRLIINHCKMLEGIPELPLSLKRIEARGCTSLETLSSSSSPLWSSLLQWFKSAKFQV* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1653 256 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 4 105 - -
Vvi18g1653 256 Pfam Leucine Rich Repeat 150 168 IPR001611 GO:0005515
Vvi18g1653 256 SMART LRR_typ_2 100 122 IPR003591 -
Vvi18g1653 256 SMART LRR_typ_2 173 196 IPR003591 -
Vvi18g1653 256 Gene3D Ribonuclease Inhibitor 1 149 IPR032675 -
Vvi18g1653 256 Gene3D Ribonuclease Inhibitor 150 253 IPR032675 -
Vvi18g1653 256 SUPERFAMILY L domain-like 3 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1653 Vvi-Chr18 21721048 21721818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1653 57 185 WRKY Transcription Factor Family AT4G12020 32.692 3.73e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1653 - - vvi:104882705 494.197