Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1644 ATGAGGTCAATGAATCTAGTCCTCCTCTTTTGCGCTTTTCTGAATCTAATGGCTTCTGTGGCCTTCGCCAATGTGGTTCTCATTGGGAACAACGTAACTCTCTCTTTCGACGACATCCAAGCTAACTTCGCTAAACCAGTTAAAGGGTCGGGAGAATGCGGGATATTATATGTGGCAGAGCCTCTAGATGCATGTTCACCTTTGACTAATGCAGTGGAGAAGGTTGAGGGTGCTAGTTCACCATTTGTATTAATTGTTAGAGGAGGGTGTGGCTTTGAGGATAAAGTGAGAAACGCCCAAAAAGCAGGGTTCGCAGCTGCTATTGTATATGATAATGAAGATGGTGGTGTTTTGGTTGCAATGGCTGGAAATTCTGCTGGAATAAAAATACATGCTGTCTTTGTTTCCAAAGCTTCAGGCATGGTACTCCAAACGTATGCTGGTTCTCCTGACATGGAGCTGTGGATAATTCCAAGCTTTGAAAATTCAGCATGGTCAATCATGGCTATTTCTTTTATTTCCCTACTTGCCATGTCTGCAGTGCTGGCTACTTGTTTCTTCGTCCGCAGGCATCGCATAAGGCGACAACGACCTAGAGTTTCTCGTGTCCGGGAATTCCATGGGATGAGCAGTCGCTTAGTGAAGGCAATGCCGAGCCTTATTTTTACAACTGTTTTAGAGGATAATTGTACTTCAAGAACATGTGCCATATGCCTTGAAGACTATAATGTTGGAGAGAAGCTCAGAATTCTGCCTTGTCGTCACAAGTTTCATGCTTTTTGTGTGGACTCTTGGCTTACGTCATGGAGAACCTTTTGCCCTGTTTGCAAGCGCGATGCAAGAACAAGCACAGGTGATCCCCCATCAGAAAGCACACCTTTGCTTTCTTCCAGCCCAGGCTCTTTGGCTCCCTCTTCTCTGGTGTCATCTGTAAGATCATCTCTAGCCTCATCCTCAGCAATTCATATAGCTCCATCACCATCACCATCACATTCCCTCTCAGTTTCTCGGAACAACTCCCTGTCCGCCACTCCTTACATCCAGCAGTCCCTTCAGTCTTACCGCCAATCTTCTTTAAGTGTAAGCCGAAGCTCACTAGACCTTAGGAATGCGTCTTCCCAAAGATCTCATGCTTCCTATTTGGTTTCACCTCATTCTATGGGTTACCCATCATTATCACCTCTTAACTCAAGATACCTGTCCCCATACATTCCAAGCCCAAGCAACGCCTCACTGAGTTATGTTGGCTCATCTAGTCGACCGCCACACCCACTGCATTATAGCGAGTCAGCTACAAGTTTTTCTCCTTACACTTCTGCTCAATCTCTCCCGGAATGTTGA 1341 0.4564 MRSMNLVLLFCAFLNLMASVAFANVVLIGNNVTLSFDDIQANFAKPVKGSGECGILYVAEPLDACSPLTNAVEKVEGASSPFVLIVRGGCGFEDKVRNAQKAGFAAAIVYDNEDGGVLVAMAGNSAGIKIHAVFVSKASGMVLQTYAGSPDMELWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRQRPRVSRVREFHGMSSRLVKAMPSLIFTTVLEDNCTSRTCAICLEDYNVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGDPPSESTPLLSSSPGSLAPSSLVSSVRSSLASSSAIHIAPSPSPSHSLSVSRNNSLSATPYIQQSLQSYRQSSLSVSRSSLDLRNASSQRSHASYLVSPHSMGYPSLSPLNSRYLSPYIPSPSNASLSYVGSSSRPPHPLHYSESATSFSPYTSAQSLPEC* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1644 446 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 195 282 - -
Vvi18g1644 446 Pfam Ring finger domain 234 277 IPR001841 -
Vvi18g1644 446 SUPERFAMILY PA domain 82 162 IPR046450 -
Vvi18g1644 446 SUPERFAMILY RING/U-box 224 290 - -
Vvi18g1644 446 MobiDBLite consensus disorder prediction 281 302 - -
Vvi18g1644 446 Gene3D - 11 152 - -
Vvi18g1644 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 282 IPR013083 -
Vvi18g1644 446 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 23 157 - -
Vvi18g1644 446 CDD PA_C_RZF_like 10 164 IPR044744 -
Vvi18g1644 446 Pfam PA domain 64 141 IPR003137 -
Vvi18g1644 446 MobiDBLite consensus disorder prediction 285 302 - -
Vvi18g1644 446 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Vvi18g1644 446 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 159 287 - -
Vvi18g1644 446 SMART ring_2 235 276 IPR001841 -
Vvi18g1644 446 MobiDBLite consensus disorder prediction 410 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1644 Vvi-Chr18 21471925 21496571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1644 20 445 C3H Transcription Factor Family AT1G22670 48.055 2.84e-116 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1644 K15692 - vvi:100246359 745.347