Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1622 ATGGCTTCAACCAGCGCAGGAGATGCCTATTCTTATCAAGTGTTCCTGAGCTTTAGAGGGGCCGACACCAGAAAGAATTTTACCGATCATCTCTATACAGCTTTAGTTGCCAATGGAATTCGCACCTTCAGGGATAATGAAGGAGTGGAGAAAGGAGGAGAGATTAAACTGCATCTCATCAAAGCTATTGAATTGTCAAGGATTTCCGTTATCGTTCTCTCTAAAAATTATGCTCATTCTAAATGGTGTCTTGAGGAACTCTTGAAGATCGTTGAGTGTTTAAGAGAAAGGGGACAGATAGTTTTGCCGGTTTTCTATCATGTGGATCCCTCCCAAATTCGGAATCAAACAGGGGTTTATAGTGAAGTATTTGCCGATTATGAGAGAAATGCAGATCAAACCAAGAAGGAAATGATACAAAAATGGAGAAGCGCACTAAGAGAAGTAGCCAATCTGGCCGGATACGAGCTACAAACTGAGTACGAGTCTGAGATTGTTACAAGAATTGTTCAAGATATTTTGAGTAAATTGATGTACGAGCACTTACATGTTGATGAGAAGCTAGTCGGAATGGATTTTCGATTGAAGAGATTAAATTCATTGATAAGTGTGGATTCAAAAGATGTTCGCATGGTAGGAATTTATGGAATTGGTGGCATAGGGAAGACAACCATTACTAAAGTTTTTTATAATCAAAACTCTCATCAATTTCAAAGTAGCAGCTTTCTTGCAAATATTAGAGAGATTTTCAAAGAAAATCGTGGTCTACTTCGTTTACAAAAGAAACTTCTTCGTGATGCTCAAGTATTGGGAGTAAATGAAAAATTAACAACTTTTGATGAAGGAATCAATATGATCAAAAGTAGACTTTGCCATAAAAAGGTACTTGTTGTTCTTGATGATGCTGATCATTGGTCTCAATTAAAATCCTTAGTTGGAAAACGTGACTGGTTTGGTGAAGGAAGTAAAATCATCATAACCACTAGGAACAAACATCTATTAATTGAGCATGAAATGGATGAATTGTATGAACCGCCAATGTTAAATACAAATGAAGCTCTTGACCTCTTTTCTGAATACGCCTTCAGAAGAAATCATCGCCATGATGATTACCCATCTCTTTCTAATCGTATAATATATTATTGCCAAGGTCTGCCATTTGCTCTTAAAGTTTTAGGTTCTTCTCTATTTAGCAAGACACACGGTCAATGGAAAAGTGAATTAGATAAACTTGCTCTAGAACCTAACATGGACATTATAAATGTACTCAGAATAAGCTATGAGGGACTAAGTAACACACAGAAGAACATATTTCTCGATATTGCATGCTTCTTTAAAGGGGAGTACAAGGATTTTGTGATAAAAATATTGGATGGTTGTGGCTTCTTTGCAGAGAGTGGAATAGGAGTTCTTAATGATAGGTGTCTTGTCACTATTTTAGATAGAAAGTTATGGATGCATGATTTGATACAACAATTGGGTTGGGAAATTGTTCGAGAACAAGGTTATACCAACATTGGCAGACGTAGCCGGTTATGGAACTTTGTGGATGTTCAACACATGTTAATAAAGAAGACGGGAACAAATGCAATTGAAGGCATATTTCTAGACTTGCCTAAATCATGTCAAATCAATTTTACAACTGAAGCCTTGGCAATGATGACTGAACTCAGATTACTCAAAATTAAAAGTACTTCTGATTACTTTGGTCACGTAAATCTTCCCCGAGACTTTGAATTTCCTTCTTACGAGTTAAGATATCTCTACTGGGAGGGATATCCATTAGAATCTTTGCCATCAAAATTTCAGGGGACACACCTGATTGAACTCAGCATGCATTATAGCCTTGTAAAAGAACTCTGGAGAGGGGATGAGGTAAAGATTATTATTTATTTATATGTATACCTTCCTTTCTAA 1917 0.3657 MASTSAGDAYSYQVFLSFRGADTRKNFTDHLYTALVANGIRTFRDNEGVEKGGEIKLHLIKAIELSRISVIVLSKNYAHSKWCLEELLKIVECLRERGQIVLPVFYHVDPSQIRNQTGVYSEVFADYERNADQTKKEMIQKWRSALREVANLAGYELQTEYESEIVTRIVQDILSKLMYEHLHVDEKLVGMDFRLKRLNSLISVDSKDVRMVGIYGIGGIGKTTITKVFYNQNSHQFQSSSFLANIREIFKENRGLLRLQKKLLRDAQVLGVNEKLTTFDEGINMIKSRLCHKKVLVVLDDADHWSQLKSLVGKRDWFGEGSKIIITTRNKHLLIEHEMDELYEPPMLNTNEALDLFSEYAFRRNHRHDDYPSLSNRIIYYCQGLPFALKVLGSSLFSKTHGQWKSELDKLALEPNMDIINVLRISYEGLSNTQKNIFLDIACFFKGEYKDFVIKILDGCGFFAESGIGVLNDRCLVTILDRKLWMHDLIQQLGWEIVREQGYTNIGRRSRLWNFVDVQHMLIKKTGTNAIEGIFLDLPKSCQINFTTEALAMMTELRLLKIKSTSDYFGHVNLPRDFEFPSYELRYLYWEGYPLESLPSKFQGTHLIELSMHYSLVKELWRGDEVKIIIYLYVYLPF* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1622 638 SUPERFAMILY "Winged helix" DNA-binding domain 418 522 IPR036390 -
Vvi18g1622 638 SMART till_3 11 152 IPR000157 GO:0007165
Vvi18g1622 638 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 620 IPR044974 GO:0006952
Vvi18g1622 638 Pfam TIR domain 12 178 IPR000157 GO:0007165
Vvi18g1622 638 Pfam NB-ARC domain 201 412 IPR002182 GO:0043531
Vvi18g1622 638 ProSiteProfiles TIR domain profile. 10 177 IPR000157 GO:0007165
Vvi18g1622 638 Gene3D - 9 173 IPR035897 -
Vvi18g1622 638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 441 IPR027417 -
Vvi18g1622 638 PRINTS Disease resistance protein signature 289 303 - -
Vvi18g1622 638 PRINTS Disease resistance protein signature 211 226 - -
Vvi18g1622 638 PRINTS Disease resistance protein signature 382 396 - -
Vvi18g1622 638 PRINTS Disease resistance protein signature 552 568 - -
Vvi18g1622 638 Gene3D - 174 341 IPR027417 -
Vvi18g1622 638 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 155 IPR035897 -
Vvi18g1622 638 Gene3D - 347 431 IPR042197 -
Vvi18g1622 638 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1622 Vvi-Chr18 20963648 20971296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1622 12 627 WRKY Transcription Factor Family AT4G12020 31.621 3.17e-86 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1622 - - vvi:100260625 1229.93