Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1621 ATGTTGGGCGGCCCAACCAAGTCCTCTGATCGGGGATCAACAACAGAAACCATCCAAGAAAAGACGATACTTAACGGAGTTACAGGAATGGCTTGCCCCGGAGAAATCCTGGCCGTTCTTGGTCCATCAGGGAGCGGAAAATCAACTCTCCTAAACGCACTTGCAGGGAGAATCCAAGGACACTGTTTCACCGGAACAGTACTGGCCAACGGCCGGAAACTTACTAAACCGGTGCTGAGACGAACCGGGTTCGTGACTCAGGACGACATCCTCTATCCCCACCTCACAGTCCGGGAAACTCTCATCTTCTGCTCGCTGCTTCGCTTGCCCAACACCCTCACAAAACAAGAAAAAATCTCACTGGCTGACTCGGTGATCGCCGAGCTGGGGCTCGCAAAATGCGAGAACACGATAATAGGAAATAGCTTCATAAGAGGAGTTTCAGGGGGAGAGAGGAAGCGAGTAAGCATAGCACACGAGATGCTGATAAACCCAAGTCTTCTGATACTGGACGAGCCCACGTCTGGGTTGGACTCGACCTCGGCATACAGGCTGGTTTCCACGCTGGTGTCACTGGCAAACAAGGGGAAGACCATAGTAACATCCATGCACCAGCCCTCCAGTCGAGTCTACCAGATGTTTCACTCTGTGCTCGTCTTGTCCGAAGGCAGATGCTTGTACTTTGGAAAGGGAAGCCAAGCCATGAGCTACTTCGAAACTGTTGGCTTCACGCCGTCTTTTCCCATGAACCCAGCTGACTTCCTCCTCGATCTCGCTAACGGGGTATGCCATCTTGATGGAGTAAGTGAGAGAGAGAAGCCCAACATAAAGCAAGCTTTAGTTTCTTCTTACAACAGCTTGTTAGCTCCAAAGGTGAAAGATGCCTGCAACATGGATACCAACGTCACTGCACCTAAGGAGACTGTGAGCCTGGCTTCAAAAGAGTGCAGAAGAAGGTGCAGTTACAGTGGCCTTTCCACTTGGTTCAACCAGTTTAGCATTCTGCTCCAAAGAGGCTTGAAAGAAAGAAAGCACGAATCCTTTAACTCTCTCAGGGTTTTCCAAGTGATTGCCGCTGCATTATTGGCTGGTTTAATGTGGTGGCACTCTGATTTTCTAGACATTCAAGATAGACTCGGCCTCCTTTTCTTCATTGCCATCTTCTGGGGTGTGTTTCCATCCTTTAACTCTGTATTCGCCTTCCCCCAAGAGCGAGCTATCTTCATGAAGGAACGGGCTTCTGGTATGTACACTCTTTCTTCCTACTTCATGGCTCGAATCGTTGGAGACATGCCCATGGAGCTGATTCTCCCTATGGTTTTCCTCACGGTGGCTTATTGGATGGCTGGACTAAAGCCTGAAGTGGGTGCATTTCTTCTTACATTAGTGATTCTCCTTGGCTACGTGCTCGTGTCTCAGGGACTTGGCCTTGCTCTTGGTGCAGCTATCATGGATGCAAAGAAGGCTTCTACCATGGTTACTGTCACAATGTTGGCATTCGTTTTAACAGGAGGGTTTTATGTGCATAAGATGCCATCTTGCATGACTTGGATCAAGTATATTTCCACTACCTTCTACAGTTATAGGCTTCTTATCAATGTCCAGTATGGAGAAGGGAAAAGAATCTCCTCTCTATTGGGTTGTTCTCACCATGGAATCAACAGGGCCAGCTGCAAATTCATTGAAGAAGACATTGGAGGCCAAATCAGCCCAGCATTTTGCATCACTGCCATGGTTTTTATGTTTGTGGGGTACAGGTTACTGGCTTACCTTGCATTGAGATGCATCAAGGCCTGA 1797 0.4847 MLGGPTKSSDRGSTTETIQEKTILNGVTGMACPGEILAVLGPSGSGKSTLLNALAGRIQGHCFTGTVLANGRKLTKPVLRRTGFVTQDDILYPHLTVRETLIFCSLLRLPNTLTKQEKISLADSVIAELGLAKCENTIIGNSFIRGVSGGERKRVSIAHEMLINPSLLILDEPTSGLDSTSAYRLVSTLVSLANKGKTIVTSMHQPSSRVYQMFHSVLVLSEGRCLYFGKGSQAMSYFETVGFTPSFPMNPADFLLDLANGVCHLDGVSEREKPNIKQALVSSYNSLLAPKVKDACNMDTNVTAPKETVSLASKECRRRCSYSGLSTWFNQFSILLQRGLKERKHESFNSLRVFQVIAAALLAGLMWWHSDFLDIQDRLGLLFFIAIFWGVFPSFNSVFAFPQERAIFMKERASGMYTLSSYFMARIVGDMPMELILPMVFLTVAYWMAGLKPEVGAFLLTLVILLGYVLVSQGLGLALGAAIMDAKKASTMVTVTMLAFVLTGGFYVHKMPSCMTWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSHHGINRASCKFIEEDIGGQISPAFCITAMVFMFVGYRLLAYLALRCIKA* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1621 598 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 18 590 - -
Vvi18g1621 598 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Vvi18g1621 598 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 6 247 IPR003439 GO:0005524
Vvi18g1621 598 Pfam ABC transporter 26 175 IPR003439 GO:0005524
Vvi18g1621 598 Gene3D - 13 241 IPR027417 -
Vvi18g1621 598 SMART AAA_5 33 224 IPR003593 GO:0016887
Vvi18g1621 598 Pfam ABC-2 type transporter 204 272 IPR043926 GO:0140359
Vvi18g1621 598 Pfam ABC-2 type transporter 331 536 IPR013525 GO:0016020|GO:0140359
Vvi18g1621 598 FunFam ABC transporter G family member 22 12 241 - -
Vvi18g1621 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 242 IPR027417 -
Vvi18g1621 598 CDD ABCG_EPDR 6 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1621 Vvi-Chr18 20935211 20941972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1621 23 261 Calmodulin-binding Proteins AT2G36910 27.572 1.18e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1621 K05681 - vvi:100248658 1181.39