Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1607 ATGGAGATGGAATCATGCGTCCCTCCTGGCTTCAGGTTTCACCCCACCGAGCAAGAACTTGTGGATTATTACCTCAAGAGGAAGATCAACTCTCTTAAAATTGATCTAGATGTTATTATCGAAATCGATCTCTACAGGATGGAGCCATGGGACATCCAAGATAGATGCAAGCTGGGCTATGATGAGCAGAATGAGTGGTACTTTTTCAGTCACAAAGACAAGAAGTATCCGACGGGAACCCGGACAAATAGAGCTACTGCTGCTGGATTCTGGAAGGCCACAGGTAGAGACAAGGCTGTGATTTTAAGGAACAGAATCATAGGGATGAGGAAGACCCTGGTGTTCTACAAAGGCCGCGCCCCCAACGGAAGGAAAACTGATTGGATTATGCATGAGTATCGACTCCAAACATCTGAACATGGACCGCCTCAGGAAGAAGGATGGGTGGTGTGTCGGGCATTCAAGAAGCCAACTAGTAGTCACAAGCAAAGTTATGAAGCTTGGAGTCATGCTTACTATGTGAGGGATAGCAGCCATGTTGAACCTCCATCACTCCCAGCTACTCTAAGCCCAATGCATATGGTCCACCCAAATCAAGGTTTTTACCAACGATACTTTGGTTCAGAGCAAGAGCTCATGTACAACCATGGGATTATGAACAATCAAGCCTTTGAAATTCCACAGCTCGATAGCCCCAGTGCCCTTTCCCCAAGTTTGGCAACAAAAGAAGTTTTCGAGCACAATGGCATGAACAATAGCGAATACTTTGAGGACGAAAACAGCGATCATGCTAAGCAGTATATCGACTGGAAAAATTTGGATGATTTGCTCGCATCACAACTGGCTGACACAACATCATCAGCCCCATTAGTCCCCTACAATTCTGAGCTAGGTGCTCAAAATCCTGTGAGCCATCTTCTTGGATGCTTTCCTGATTTGTAA 942 0.4565 MEMESCVPPGFRFHPTEQELVDYYLKRKINSLKIDLDVIIEIDLYRMEPWDIQDRCKLGYDEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVILRNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRLQTSEHGPPQEEGWVVCRAFKKPTSSHKQSYEAWSHAYYVRDSSHVEPPSLPATLSPMHMVHPNQGFYQRYFGSEQELMYNHGIMNNQAFEIPQLDSPSALSPSLATKEVFEHNGMNNSEYFEDENSDHAKQYIDWKNLDDLLASQLADTTSSAPLVPYNSELGAQNPVSHLLGCFPDL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1607 313 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Vvi18g1607 313 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 233 - -
Vvi18g1607 313 FunFam NAC domain-containing protein 16 160 - -
Vvi18g1607 313 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Vvi18g1607 313 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Vvi18g1607 313 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1607 Vvi-Chr18 20598144 20599942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1607 3 312 NAC Transcription Factor Family AT1G71930 55.090 1.39e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi18g1607 NAM 2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1607 - - vvi:100265732 643.269