Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1604 ATGAGGAAAGAAGCATCAAAACCAAGAGCAGTGCTTCCAAACGCAACACCAAGACTGAGGGAGGAGTATCAGATAGGGAGAAAACTGGGTCAGGGGCAGTATGGCATAACGTACCTGTGCACGCACAAATCCTCAGGCACTCACTTCGCATGCAAATCCATTCCAAAGCGGAAACTGGTGTGCAAAGAAGACTACGACGACGTTTTGCGAGAGATTCAGATCATGCATCACCTCTCCGAACACCCCCATGTCGTCCAAATCAAAGCCACCTACGAGGACTCCGTCTTCGTCCACTTGGTCATGGAGCTCTGCGCTGGGGGTGAGCTCTTCGATCGTATCATTCAAAGGGGCCACTACAGTGAGCGCCAAGCCGCTCATTTGATCAAGATCATTGTGGGTGTTGTTGAGGCTTGTCACTCTCTTGGCGTCATGCATAGAGATCTCAAGCCCGAGAACTTCCTCTTCGAGAGTACCGACGAGGATGCCAAGCTCAAGGCCACCGATTTTGGTTTGTCTGTCTTCTATAAGCCAGGTGAAGTGTTTTTTGAAGTTGTTGGAAGTCCTTATTATGTGGCGCCTGAAGTGCTTCGCAAGCATTACGGACATGAAGTAGATGTATGGAGTGCTGGTGTTATTTTATACATCTTACTAAGTGGAGTTCCACCTTTTTGGGCAGAAAATGACACAGGAATTTTCAAAGAGATCTTGAAAGGCAAATTGGATTTTAAATCTGATCCTTGGCCTAGTATTTCAGAGAGTGCAAAAGACTTGATTAAGAAAATGCTTGAAATGGACCCTAAGAAAAGAATATCTGCTCATGAAGTCCTATGTCATCCTTGGATTGTGGATGACAGAGTTGCACCGGACAAACCATTGGATTCTGCAGTATTATCACGCCTGAAGCAATTCTCAGCAATGAACAAACTCAAGAAGATGGCCTTGCGTGTTATAGCAGAAAGACTTTCAGAAGAAGAAATTGGTGGTTTAAAAGAACTGTTCAAAATGATTGACACAGATAATAGCGGGACGATAACATTTGAAGAACTGAAAGAGGGCTTAAGGAAAGTGGGCTCTGAACTAATGGAATCTGAGATTAAGACTCTTATGGATGCGGCCGATATTGACAACAGTGGAACAATAGACTATGGTGAATTTCTTGCTGCTACCTTGCACTTGAATAAGATGGAGAGAGAAGAGAATTTAATTGCAGCCTTCTCTTTTTTCGACAAAGATGGTAGTGGTTACATAACCATTGATGAGCTTCAACAGGCTTGTAGAGAGTTTGGTCTAGGTGATGCTCATCTGGATGAGATGATTAGAGAAATTGATCAAGACAATGATGGACGTATAGATTATGGGGAGTTTACTGCAATGATGAGGAAAGGTGATGGAGGAATTGGGAGCAGAACCATGAGAAATAATTTGAACTTCAACTTGGCAGATGCATTTGGAATAAATGACACAACTTAA 1470 0.434 MRKEASKPRAVLPNATPRLREEYQIGRKLGQGQYGITYLCTHKSSGTHFACKSIPKRKLVCKEDYDDVLREIQIMHHLSEHPHVVQIKATYEDSVFVHLVMELCAGGELFDRIIQRGHYSERQAAHLIKIIVGVVEACHSLGVMHRDLKPENFLFESTDEDAKLKATDFGLSVFYKPGEVFFEVVGSPYYVAPEVLRKHYGHEVDVWSAGVILYILLSGVPPFWAENDTGIFKEILKGKLDFKSDPWPSISESAKDLIKKMLEMDPKKRISAHEVLCHPWIVDDRVAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKEGLRKVGSELMESEIKTLMDAADIDNSGTIDYGEFLAATLHLNKMEREENLIAAFSFFDKDGSGYITIDELQQACREFGLGDAHLDEMIREIDQDNDGRIDYGEFTAMMRKGDGGIGSRTMRNNLNFNLADAFGINDTT* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1604 489 CDD EFh 401 460 IPR002048 GO:0005509
Vvi18g1604 489 SUPERFAMILY EF-hand 320 461 IPR011992 -
Vvi18g1604 489 SUPERFAMILY Protein kinase-like (PK-like) 20 292 IPR011009 -
Vvi18g1604 489 Pfam EF-hand domain pair 329 389 IPR002048 GO:0005509
Vvi18g1604 489 Pfam EF-hand domain pair 399 460 IPR002048 GO:0005509
Vvi18g1604 489 FunFam Calcium-dependent protein kinase 1 25 108 - -
Vvi18g1604 489 ProSitePatterns EF-hand calcium-binding domain. 337 349 IPR018247 -
Vvi18g1604 489 ProSiteProfiles Protein kinase domain profile. 23 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1604 489 Gene3D - 292 462 - -
Vvi18g1604 489 ProSiteProfiles EF-hand calcium-binding domain profile. 432 465 IPR002048 GO:0005509
Vvi18g1604 489 FunFam Calcium-dependent protein kinase 1 289 463 - -
Vvi18g1604 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Vvi18g1604 489 SMART efh_1 328 356 IPR002048 GO:0005509
Vvi18g1604 489 SMART efh_1 434 462 IPR002048 GO:0005509
Vvi18g1604 489 SMART efh_1 400 428 IPR002048 GO:0005509
Vvi18g1604 489 SMART efh_1 364 392 IPR002048 GO:0005509
Vvi18g1604 489 ProSitePatterns EF-hand calcium-binding domain. 373 385 IPR018247 -
Vvi18g1604 489 CDD EFh 329 388 IPR002048 GO:0005509
Vvi18g1604 489 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 455 - -
Vvi18g1604 489 ProSitePatterns EF-hand calcium-binding domain. 409 421 IPR018247 -
Vvi18g1604 489 Gene3D Phosphorylase Kinase; domain 1 25 108 - -
Vvi18g1604 489 ProSitePatterns EF-hand calcium-binding domain. 443 455 IPR018247 -
Vvi18g1604 489 CDD STKc_CAMK 23 280 - -
Vvi18g1604 489 Pfam Protein kinase domain 23 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1604 489 ProSitePatterns Protein kinases ATP-binding region signature. 29 62 IPR017441 GO:0005524
Vvi18g1604 489 FunFam Calcium-dependent protein kinase SK5 109 293 - -
Vvi18g1604 489 ProSiteProfiles EF-hand calcium-binding domain profile. 324 359 IPR002048 GO:0005509
Vvi18g1604 489 ProSiteProfiles EF-hand calcium-binding domain profile. 360 395 IPR002048 GO:0005509
Vvi18g1604 489 ProSiteProfiles EF-hand calcium-binding domain profile. 396 431 IPR002048 GO:0005509
Vvi18g1604 489 Gene3D Transferase(Phosphotransferase) domain 1 109 291 - -
Vvi18g1604 489 SMART serkin_6 23 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1604 Vvi-Chr18 20503034 20524643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1604 4 489 EF-hand Containing Proteins AT4G09570 79.592 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi18g1604 Pkinase 1.5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1604 K13412 - vvi:100262413 987.252