Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1602 ATGGCAGATGCTCATGAAACGGATAAAAACATTGAGATCTGGAAGATCAAGAAGTTGATCAAGGCATTGGAAGCTGCTAGAGGCAATGGCACTAGCATGATATCTCTTGTCATGCCTCCCCGTGATCAAATATCAAGAGTTACTAAGATGCTTGGGGATGAGTTTGGAACTGCTTCAAACATTAAAAGCAGGGTCAATCGTCAATCTGTTTTAGGTGCAATCACATCTGCACAGCAGAGACTGAAGCTGTACAACAAGGTTCCTCCTAATGGACTTGTGCTGTATACAGGTACCATTGTGACTGAAGATGGAAAGGATAAGAAGGTGACAATTGATTTTGAGCCTTTTAGGCCTATTAATGCATCTCTTTACCTATGTGACAACAAGTTCCATACAGAAGATATGAATGAACTGTTAGAATCCGATGACAAGTTTGGTTTTATTGTCATGGATGGAAATGGTACCCTTTTTGGCACATTAAGTGGCAACACCCGAGAGGTGCTTCATAAATTTACTGTTGACCTTCCAAAAAAACATGGAAGAGGTGGGCAATCAGCACTTCGATTTGCTCGTCTTAGAATGGAGAAGCGTCACAACTATGTGAGGAAGACAGCAGAGCTAGCCACACAGTTTTTTATAAATCCTGCCACCAGCCAGCCCAATGTTGCAGGATTGATACTTGCTGGTTCTGCTGATTTCAAAACTGAGCTGAGTCAGTCTGACATGTTTGATCCCCGTCTTCAGGCCAAACTACTGAATGTAGTGGATGTTTCTTATGGAGGAGAAAATGGTTTCAATCAGGCAATAGAGTTATCATCTGAGATCCTATCCAATGTGAAGTTCATTCAGGAGAAGCGCTTGATAGGCAAATATTTTGAGGAGATCAGCCGGGATACTGGGAAGTATGTCTTTGGTGTTGATGACACACTGAAAGCCTTGGAGATGGGTGCTGTTGAGATTCTGATTATGTGGGAAAATCTTGATATTAATAGGTACGTGTTGAACAACAGCAATACAACTGAGATTGTCATAAAACACTTGAACAAGGAGCAAGCGACTGATCAGAGCAACTTCAGGGATTCAGCCACCTCGGCTGAATTGGAGGTTCAAGAAAAAATGTCACTGTTAGAGTGGTTTGCCAATGAGTACAAGCGCTTTGGTTGTGCACTTGAGTTCGTCACCAACAAATCACAAGAGGGATCCCAGTTCTGCAGAGGATTTGGTGGGATAGGTGGAATCCTTCGTTACCAGCTGGATATGAGATTATTTGATGAGGTTTCTGATGATGGAGAAAATTATGAGGATTCAGATTAG 1314 0.4216 MADAHETDKNIEIWKIKKLIKALEAARGNGTSMISLVMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKDKKVTIDFEPFRPINASLYLCDNKFHTEDMNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKLLNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISRDTGKYVFGVDDTLKALEMGAVEILIMWENLDINRYVLNNSNTTEIVIKHLNKEQATDQSNFRDSATSAELEVQEKMSLLEWFANEYKRFGCALEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRLFDEVSDDGENYEDSD* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1602 437 Gene3D - 279 437 IPR029064 -
Vvi18g1602 437 Gene3D eRF1 domain 1 1 135 IPR024049 -
Vvi18g1602 437 SUPERFAMILY Translational machinery components 142 276 - -
Vvi18g1602 437 Gene3D eRF1 domain 2 136 277 IPR042226 -
Vvi18g1602 437 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 3 429 IPR004403 GO:0003747|GO:0006415
Vvi18g1602 437 FunFam Peptide chain release factor subunit 1 279 437 - -
Vvi18g1602 437 Pfam eRF1 domain 2 144 277 IPR005141 -
Vvi18g1602 437 FunFam Eukaryotic peptide chain release factor subunit 1 2 135 - -
Vvi18g1602 437 Pfam eRF1 domain 1 18 138 IPR005140 -
Vvi18g1602 437 FunFam Eukaryotic peptide chain release factor subunit 1 136 277 - -
Vvi18g1602 437 Pfam eRF1 domain 3 281 418 IPR005142 -
Vvi18g1602 437 SMART eRF1_1_2 4 140 IPR005140 -
Vvi18g1602 437 NCBIfam peptide chain release factor aRF-1 12 417 IPR004403 GO:0003747|GO:0006415
Vvi18g1602 437 SUPERFAMILY L30e-like 278 420 IPR029064 -
Vvi18g1602 437 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1602 Vvi-Chr18 20462869 20464182 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1602 1 437 Eukaryotic Initiation Factors Gene Family AT3G26618 89.016 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1602 K03265 - vvi:100267567 852.432