Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1600 ATGAGGAGCCATGAGCAGAGGGTCTATTTCTTCTTCTTCTTCTTGTCTTCTGTTCCTTTTGTGCTGTCTCTGTCTTCGACTCAGAAAGAAATCATGGAGAAGCTATCTCGGAGCGTCTTAGTCTGGGGAAATGAAAAGGAGCCAAACCCATGTGCATGGAAGGGAGTTTCATGCAGCTCCGACTACTCCTCAATAGCCAATCTTTCCCTCTCGGGATTGTCTCTCTCTGACTCTAGTTTTCTGCCACTTGTCTGTGAGATTGTGTCTTTGGAAGCTCTTGACCTCTCCGACAACTCTTTCAGCTCTGTTCCAGAAGGGTTCATCACTGCTTGTGGGAAGATTGATGGGTTGAAGCAGCTGAATTTCAGTAAGAACAGGTTGGTCGGTTCTTTGCCTGCTTTTAATGGCTTTGTTGGGTTAGAGTCGTTGGATTTTTCCAGTAACAAGTTGAATGGAACAATTGTTTCACAGTTAGGGTCATTGAATGATCTAAAAAGATTGTACCTTACGTCCAATTATTTGAGTGGTAATGTTCCCATCAACCTTGGAAATTCCAAGGTGTTAGAGCATCTTATTCTTTCCAAGAATTCCTTCACTGGTAGTATTCCTGATGGGCTCCTAGAATATCGGAAGTTGGTTCGGATTGATTTGAGTGAAAATCAACTTTCTGGGCCTTTACCTGGGAAAATTGGAGACCTTTCCAAGCTGGAAGAGTTGATTCTGTCTTCCAATAATTTGAGTGGAGAAATCCCTATGAACCTTTCAAATTTCCAAAATCTTTTGAGATTCGCCGCGAATCAGAACAAGTTTATAGGCAATATTCCAGTTGGAATTTCAAGATCTCTCAAGAATTTGGATCTTAGTTATAATAAATTAGGTGGGCAAATTCCAACTGACCTTTTGATGCAGTCAAATTTGCAGACAGTGGATCTTTCTTACAATCTGCTAGAGGGATCAATACCTGCAAAAATATCTCCAAACATGGTTAGGTTGAGATTGGGAAGCAATTCACTTCATGATACTATCCCATCTGAGCTTGGAACGCTACTGAAATTGACTTACTTGGAGCTAGAAAACAATAGCTTGTCGGGATCCATCCCTTCCGAGTTGGGTTCTTGCCGGAGTTTGGCGCTGTTGAATCTGGGAATGAATTACTTGACTGGCAGTCTGCCTGTGGAGTTGGCTAGTCTTAGCAGTCTTCAAGTTCTGAAGCTTCAGTCCAACAAGCTGGTTGGTGAGATTCCATATCAGATTAGCCAAATGCAAAGTTTGTCCATTCTGAATATTAGTGGGAATTTGCTTAGTGGTTCAATCCCAATTTCAATTTCAAGGTTGCAGAATCTCACCAACTTGAACTTACAAGGCAACCGTCTCAGTGGTTCAATACCTGCAACAATTGACAGCTTGAAGTATCTGTTAGAACTTCAGCTTGGAAACAATCAACTGAATGGCCATATTCCAGGGATGCCACTTAGCTTGCAGATTGCTTTGAATCTCAGCCACAACCTCTTTGAAGGAGCTATCCCTGAGACTCTCTCTCGTTTGCAGGGTTTAGAAGTATTGGATCTCTCAAACAACAAATTCTCAGGTGCAATTCCAACTTCTCTGACACGAATTGGATCACTGACACAACTGCTACTTGCAAATAATCAGCTGTCTGGAGTGATTCCGGAGTTTGGAAAATATGTTACCATCATTGATACAACGGGTAATCCAAGGCTAGTTAACAGAACATTACAACGTAACTCTCCCCAGAGTTTTCCAGGCAAGAGGAAGTCTGTTGCAGTGGCGGTGGTTATTGCAGTTGCAGTTGCAGCTGCTTCTCTTGGTATTGGAGTGACAGTTGTGATTGCTGTATCTATCTCAAGACGATTTTACAGGGTGAAGGATGAACCATTAGGAGCAACAGAAGACCTCCCACCCCCTCAGGTGGTCCAAGGAAATCTTTTAACTGCAAATGCTATCCATAGGTCAAATATTGACTTCACCAAAGCCATGGAAGCTGTAGCTAGCACATCAAACATCTTGCTCAAGACAAGGTTTTCAACCTACTACAAAGCTGTCATGCCTTCTGGAAGAAGTTATTTCATCAAGAAGATTAACTGGAGTGACAAGATATTCCAATTAGGCAGCCATGAGAAGTTCGGTCAAGAGCTAGAGATCTTGGGAAAGCTGAGCAATTCGAATGTCATGATGCCACTGGCCTATGTTCTGACTGTTGATAGTGCCTATCTCTTCTATGAATATGCCCAGAAGGGTACCCTTTTTGATATCCTTCATGGCAGCTTTGGAAGTGCTCTGGATTGGGCAAGCCGTTACAGCATTGCAGTGGGAATAGCTCAGGGTTTGGCTTTTCTCCATGGATACACCTCTGGTCCGGTTCTCCTCCTTGATCTGTCCAGCAAAAGCATTATGCTGAAGTCAGTGAAGGAACCTCAAATCGGGGACATTGAACTCTATAAGGTGATTGATCCATCCAAGAGCACTGGTAGCGTTTCTACAGTGGCTGGCTCTGTTGGCTACGTACCTCCAGAGTACGCATACACAATGAGGGTAACTATGGCTGGGAATGTCTACAGTTTTGGGGTCATTCTGCTGGAATTGCTGACAGGAAAGCCTCCCGTCAGCGAGGGAACTGAGCTAGCGAGGTGGGTGTTGAACAACACAGCACAGCGAGACAAGTGGGATCGCATCCTTGATTTCAGCATCAGCAGAACATCACTGGCAGTTCGAAACCAGATGCTAGCAGTCTTGAAGGTTGCTCTAGGCTGTGTTAGTGTCGTGCCTGAAGCAAGGCCGAAGATGAAAAGCGTCCTTCGAATGCTTCTTAATGCCAGATAA 2841 0.4386 MRSHEQRVYFFFFFLSSVPFVLSLSSTQKEIMEKLSRSVLVWGNEKEPNPCAWKGVSCSSDYSSIANLSLSGLSLSDSSFLPLVCEIVSLEALDLSDNSFSSVPEGFITACGKIDGLKQLNFSKNRLVGSLPAFNGFVGLESLDFSSNKLNGTIVSQLGSLNDLKRLYLTSNYLSGNVPINLGNSKVLEHLILSKNSFTGSIPDGLLEYRKLVRIDLSENQLSGPLPGKIGDLSKLEELILSSNNLSGEIPMNLSNFQNLLRFAANQNKFIGNIPVGISRSLKNLDLSYNKLGGQIPTDLLMQSNLQTVDLSYNLLEGSIPAKISPNMVRLRLGSNSLHDTIPSELGTLLKLTYLELENNSLSGSIPSELGSCRSLALLNLGMNYLTGSLPVELASLSSLQVLKLQSNKLVGEIPYQISQMQSLSILNISGNLLSGSIPISISRLQNLTNLNLQGNRLSGSIPATIDSLKYLLELQLGNNQLNGHIPGMPLSLQIALNLSHNLFEGAIPETLSRLQGLEVLDLSNNKFSGAIPTSLTRIGSLTQLLLANNQLSGVIPEFGKYVTIIDTTGNPRLVNRTLQRNSPQSFPGKRKSVAVAVVIAVAVAAASLGIGVTVVIAVSISRRFYRVKDEPLGATEDLPPPQVVQGNLLTANAIHRSNIDFTKAMEAVASTSNILLKTRFSTYYKAVMPSGRSYFIKKINWSDKIFQLGSHEKFGQELEILGKLSNSNVMMPLAYVLTVDSAYLFYEYAQKGTLFDILHGSFGSALDWASRYSIAVGIAQGLAFLHGYTSGPVLLLDLSSKSIMLKSVKEPQIGDIELYKVIDPSKSTGSVSTVAGSVGYVPPEYAYTMRVTMAGNVYSFGVILLELLTGKPPVSEGTELARWVLNNTAQRDKWDRILDFSISRTSLAVRNQMLAVLKVALGCVSVVPEARPKMKSVLRMLLNAR* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1600 946 SMART LRR_typ_2 233 257 IPR003591 -
Vvi18g1600 946 SMART LRR_typ_2 539 561 IPR003591 -
Vvi18g1600 946 SMART LRR_typ_2 445 469 IPR003591 -
Vvi18g1600 946 SMART LRR_typ_2 349 373 IPR003591 -
Vvi18g1600 946 SMART LRR_typ_2 515 538 IPR003591 -
Vvi18g1600 946 SMART LRR_typ_2 87 110 IPR003591 -
Vvi18g1600 946 SMART LRR_typ_2 397 421 IPR003591 -
Vvi18g1600 946 SUPERFAMILY L domain-like 49 322 - -
Vvi18g1600 946 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 750 946 - -
Vvi18g1600 946 Gene3D Ribonuclease Inhibitor 180 276 IPR032675 -
Vvi18g1600 946 Pfam Leucine rich repeat 399 458 IPR001611 GO:0005515
Vvi18g1600 946 Pfam Leucine rich repeat 497 552 IPR001611 GO:0005515
Vvi18g1600 946 Pfam Leucine rich repeat 188 246 IPR001611 GO:0005515
Vvi18g1600 946 Gene3D Ribonuclease Inhibitor 277 586 IPR032675 -
Vvi18g1600 946 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 322 586 - -
Vvi18g1600 946 SUPERFAMILY L domain-like 275 557 - -
Vvi18g1600 946 FunFam Phytosulfokine receptor 1 181 280 - -
Vvi18g1600 946 PANTHER LEUCINE RICH REPEAT KINASE 2 61 186 - -
Vvi18g1600 946 Gene3D Ribonuclease Inhibitor 23 179 IPR032675 -
Vvi18g1600 946 Pfam Protein kinase domain 681 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1600 946 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 26 180 - -
Vvi18g1600 946 SUPERFAMILY Protein kinase-like (PK-like) 678 942 IPR011009 -
Vvi18g1600 946 Gene3D Phosphorylase Kinase; domain 1 649 749 - -
Vvi18g1600 946 ProSiteProfiles Protein kinase domain profile. 670 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1600 946 Gene3D Transferase(Phosphotransferase) domain 1 751 946 - -
Vvi18g1600 946 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 639 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1600 Vvi-Chr18 20438347 20441387 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1600 135 942 Receptor kinase-like Gene Family AT2G41820 38.351 2.93e-153 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi18g1600 Pkinase 6.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1600 - - vvi:100264185 1698.72