LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g1595	ATGAGTCTCAAAAAAGATGAGGCATATCGTTGGATGAGCGAAGAGGATGAATCATGTATCCAAGCTATGCTTTTTGCTAGCTCACATGTGTTCCCCACGATCTTGAACACTGCGGTTGAGCTAAACCTGTTTGAGATCATCGCTCGAGCAGGCCCTGGTGCTTATGTCTCACCCTCTGAGATCGCATCCCAGCTTCCCACCCAAAACCCCAATGCACCTTGTTTTATGGATCGGATGCTGCGTCTATTTGCTAGTCACGGGCTTCTATCTTACAGCCTGCGCACACTCGAAGATGGCAGAGTTGATAGGCTTTATGGTCTCACTCCCGTTTGTAAATTCTTTCTTAGGAGTGATGATGGGAGTTGTTTGGCTTCCTTATCGACCCTGGGTTCCCACCGAGCTATGAGGGAAGTTTGGCCACACTTGAAGGACGCCATTCTTAAAGGTGGTAATCAATTCCAGAAAGTCCACGGGATGAGTATGTTTGAGTACATGGACAAGGACCCGACACTAAACAAGGCCTTCAATGAGGCAATGGTTGGTCGCTCCACCATAATCATGAAGAAAATCGTGGAGACCTACCAGGGGTTTGAGGGATTAGCATCACTTGTGGACGTGGGCGGTGGAACCGGTGCAAACCTTAACATGATCATTTCCAAGTATCCTTCCATCAAAGGCATCAACTTTGATTTGCCACATGTTGTGCAAACTGCACCAACTTATCCGGAGAGAGGAATATTAGAGCAACAAAGTATGAGTCTCAAAAAAGATGAGGCATATCGTTGGATGAGCGAAGAGGATGAATCATGTATCCAAGCTATGCTTTTTGCTAGCTCACATGTGTTCCCCACGATCTTGAACACTGCGGTTGAGCTAAATCTGTTTGAGATCATCGCTCGAGCAGGCCCTGGTGCTTATGTCTCACCCTCTGAGATCGCATCCCAGCTTCCCACCCAAAACCCCAATGCACCTTGTTTTATGGATCGGATGCTGCGTCTATTTGCTAGTCACGGGCTTCTATCTTACAGCCTGCGCACACTCGAAGATGGCAGAGTTGATAGGCTTTATGGTCTCACTCCCGTTTGTAAATTCTTTCTTAGGAGTGATGATGGGAGTTGTTTGGCTTCCTTATCAACCGTGGGTTCCCACCGAGCTTTGAGGGAAGTTTGGCCATCCTTGAAGGACGCCATTCTTGAAGGAGGTGATCAATTCCAGAAAGTCCACGGGATGAGTATGTTTGAGTACATGGACAAGGACCCGACACTAAACAAGGCCTTCAATGAGGCAATGGTTGGTCGCTCCACCATAATCATGAAGAAAGTCGTGGAGACCTACCAGGGGTTTGAGGGATTAGCATCACTTGTGGACGTGGGCGGTGGAACCGGTGCAACCCTTAACATGATCATTTCCAAGTATCCTTCCATCAAAGGCATCAACTTTGATTTGCCACATGTTGTGCAAACTGCACCAACTTATCCGGGTAATAATTAA	1491	0.4735	MSLKKDEAYRWMSEEDESCIQAMLFASSHVFPTILNTAVELNLFEIIARAGPGAYVSPSEIASQLPTQNPNAPCFMDRMLRLFASHGLLSYSLRTLEDGRVDRLYGLTPVCKFFLRSDDGSCLASLSTLGSHRAMREVWPHLKDAILKGGNQFQKVHGMSMFEYMDKDPTLNKAFNEAMVGRSTIIMKKIVETYQGFEGLASLVDVGGGTGANLNMIISKYPSIKGINFDLPHVVQTAPTYPERGILEQQSMSLKKDEAYRWMSEEDESCIQAMLFASSHVFPTILNTAVELNLFEIIARAGPGAYVSPSEIASQLPTQNPNAPCFMDRMLRLFASHGLLSYSLRTLEDGRVDRLYGLTPVCKFFLRSDDGSCLASLSTVGSHRALREVWPSLKDAILEGGDQFQKVHGMSMFEYMDKDPTLNKAFNEAMVGRSTIIMKKVVETYQGFEGLASLVDVGGGTGATLNMIISKYPSIKGINFDLPHVVQTAPTYPGNN*	497

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g1595	496	PANTHER	O-METHYLTRANSFERASE	22	271	IPR016461	GO:0008168
	Vvi18g1595	496	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	378	492	IPR029063	-
	Vvi18g1595	496	Gene3D	Vaccinia Virus protein VP39	367	496	IPR029063	-
	Vvi18g1595	496	Gene3D	-	2	114	IPR036388	-
	Vvi18g1595	496	Gene3D	-	257	365	IPR036388	-
	Vvi18g1595	496	FunFam	Caffeic acid 3-O-methyltransferase	2	114	-	-
	Vvi18g1595	496	Pfam	O-methyltransferase domain	390	492	IPR001077	GO:0008171
	Vvi18g1595	496	Pfam	O-methyltransferase domain	139	242	IPR001077	GO:0008171
	Vvi18g1595	496	FunFam	Os12g0199500 protein	116	256	-	-
	Vvi18g1595	496	Pfam	Dimerisation domain	34	84	IPR012967	GO:0046983
	Vvi18g1595	496	Pfam	Dimerisation domain	285	335	IPR012967	GO:0046983
	Vvi18g1595	496	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	123	243	IPR029063	-
	Vvi18g1595	496	FunFam	Caffeic acid 3-O-methyltransferase	251	365	-	-
	Vvi18g1595	496	FunFam	Os12g0199500 protein	367	491	-	-
	Vvi18g1595	496	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	274	496	IPR016461	GO:0008168
	Vvi18g1595	496	SUPERFAMILY	"Winged helix" DNA-binding domain	265	368	IPR036390	-
	Vvi18g1595	496	Gene3D	Vaccinia Virus protein VP39	116	256	IPR029063	-
	Vvi18g1595	496	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	23	243	IPR016461	GO:0008168
	Vvi18g1595	496	SUPERFAMILY	"Winged helix" DNA-binding domain	14	117	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi18g1595	Vvi-Chr18	20311712	20314654	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi18g1595	266	494	Monolignol Biosynthesis Gene Families	AT5G54160	54.585	8.75e-84	261

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g1595	K13066		-	vvi:100260649	489.96