Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1589 ATGGATCTCAAAGATAGGCTTTCTGTAGATACCTGGACACAATCATCTTCATCCGGGAATGAATTACCGAAAGATCAACAATCATTCACCAATTTTAGTTTGCAGCAGCAGCAGCATCAGCATAAGTGGGAAGATCCTTCTGTGCTAGATTACAGTGTTAGGATTGAACCAGCTTTCCAGGAATTCAACCAGACTTCTGCAACCTCATCATCTCTTCCTTGCAACCCTAATAGTCAAATCAAAAACTTGAACCGAGAAGATTGTCAGATGAATGAGATGCTAGAACCCAATAGAATCCAAGACTGGGATCCAAGAGTGATGCTTAGCAATCTCTCTTTCCTGGAACAGAAGATACATCAACTCCAGGATTTAGTCCATCTGATTGTTGGTCGGAGAAGCCAAGTTTTGGGTCGAACAAATGAACTTGTAGCTCAGCAGCAGCAGCTTGTCACTGCTGATCTCACTTCTATTATTGTTCAATTGATCACGACTGCTGGTACTCTTCTCCCATCTGTGAAGAATACCCTTTCGACGGCTAGTCCTTCTGTTGGACAGCTTGGGCAGCTTGGTGGAGTACTGTTTCCTTCAGGAACAGGCATGAATGGGGGTGGTGTGGCACAAAGTAGTGGTGGAAGCAAGGTTTCTGATCAGTCTAACCAGATTGATCTAACTGGTGCTTGTGTAATTGAACAAAACAATGCTACTGAAGAACATGAACTGAAAGATGAAGATGATGCTGATGAAGGGGAGAACCTTCCTCCTGGCTCCTATGAGATCTTACAGCTAGAAAAGGAAGAAATCCTTGCACCTCACACCCACTTCTGCATGATATGTGGTAAGGGATTCAAGAGGGATGCGAATTTGAGGATGCACATGAGAGGTCATGGTGATGAATACAAAACTCCAGCAGCTCTTGCAAAACCCAACAAGGAATCCAGCTCTGAGCCAGTGCTTATTAAGAGGTATTCCTGCCCTTTTGCTGGTTGCAAGCGCAACAAGGATCATAAAAAGTTTCAACCTCTGAAAACCATTTTATGTGTGAAAAACCATTACAAGAGGACTCATTGCGACAAAAGCTACACTTGCAGCAGGTGCAACACCAAGAAGTTCTCAGTTATTGCTGATCTTAAAACTCATGAGAAGCATTGTGGCAAGGATAAGTGGCTTTGTTCCTGTGGAACCACTTTCTCAAGAAAAGACAAGCTTTTTGGGCATATTGCTCTCTTCCAAGGCCACACTCCTGCTATTCCCCTTGATGAAACTAAAGGATCTGTTGGGCCATCTGACCGTGGGGAAGGCAATGGAGCAGCAAATAAGGTTGGAAGTGTGGGGTTCAACTTCAGTTCAAATGCTTCAAGTGGAAGTGGAGTTCAAGATATGATGATGGATGTAAAAAGGGGTGCTGACGAGCCTACTGGTTTTTTCTCACCATTGACCTTTGATCCTTGTAGTCTCGTTGGGTTTCACGAGTTCCCTCGACCCCCATTTGAAGACTCAGAAAGTTCATTCTCTTTTCTTGTCCCAGGGTCTTGTAGCTATACAAGAAAGACTGGAGGCGAGTCTAGTTCTAATGATCTTGAGTAG 1584 0.4394 MDLKDRLSVDTWTQSSSSGNELPKDQQSFTNFSLQQQQHQHKWEDPSVLDYSVRIEPAFQEFNQTSATSSSLPCNPNSQIKNLNREDCQMNEMLEPNRIQDWDPRVMLSNLSFLEQKIHQLQDLVHLIVGRRSQVLGRTNELVAQQQQLVTADLTSIIVQLITTAGTLLPSVKNTLSTASPSVGQLGQLGGVLFPSGTGMNGGGVAQSSGGSKVSDQSNQIDLTGACVIEQNNATEEHELKDEDDADEGENLPPGSYEILQLEKEEILAPHTHFCMICGKGFKRDANLRMHMRGHGDEYKTPAALAKPNKESSSEPVLIKRYSCPFAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETKGSVGPSDRGEGNGAANKVGSVGFNFSSNASSGSGVQDMMMDVKRGADEPTGFFSPLTFDPCSLVGFHEFPRPPFEDSESSFSFLVPGSCSYTRKTGGESSSNDLE* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1589 527 SUPERFAMILY beta-beta-alpha zinc fingers 271 298 IPR036236 -
Vvi18g1589 527 ProSitePatterns Zinc finger C2H2 type domain signature. 275 295 IPR013087 -
Vvi18g1589 527 MobiDBLite consensus disorder prediction 1 26 - -
Vvi18g1589 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 273 300 IPR013087 -
Vvi18g1589 527 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 82 499 IPR044300 GO:0010044|GO:0010447
Vvi18g1589 527 Gene3D Classic Zinc Finger 257 325 - -
Vvi18g1589 527 MobiDBLite consensus disorder prediction 8 26 - -
Vvi18g1589 527 SMART c2h2final6 360 382 IPR013087 -
Vvi18g1589 527 SMART c2h2final6 322 355 IPR013087 -
Vvi18g1589 527 SMART c2h2final6 273 295 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1589 Vvi-Chr18 20208214 20209797 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1589 240 524 C2H2 Transcription Factor Family AT1G34370 73.356 1.09e-150 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi18g1589 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1589 - - vvi:100248677 1035.4