Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1576 ATGGAAGGGAATTTGAATATGATACCTGGTGGTGCCCCTTATGGAGGTCTTGATCTGCAAGGAGCGACACGAATTCACCATCATCAACATCCTCATAACTTACACCAACAACACCATTCTCACTCTCGCCAAGGGACGATGAACCATTCGTCCATCCACCATGAAGTTTTCCCACTCACAATGGGCTCAATGCAAGATTGTGACCAGTCCATTTCGATGGCTGATTACAATAAGGGGGAGAAGGGGAAGGCCCTGACAAGTGATGAGGATGAACCAAGCTTTAATGAAGATGCAATTGATGGGCACAATGATCCCAATAGAGGAAAAAAAGGGTCACCATGGCAGCGGGTGAAGTGGACTGATAAGATGGTGAGGCTTTTGATAACGGCTGTTTCTTATATTGGTGAGGATGCTGCCTCTGAATGTGGTGTTGGTGGGAGAAGGAAGTATGCAATTTTACAGAAAAAGGGCAAGTGGAAATCGGTGTCAAAGGTTATGGCTGAAAGGGGTCATTATGTTTCACCACAGCAGTGTGAGGATAAGTTCAATGATCTTAACAAAAGGTATAAGAGACTTAATGATGTGCTAGGGAGGGGCACCTCCTGTCAGGTTGTTGAGAATCCCGCACTTTTGGATATGATGGATCACTTAACGGAGAAAACGAAGGAGGATGTTAGGAAAATTTTGAGCTCAAAGCATTTGTTCTATGAAGAGATGTGTTCATACCATAATGGAAATCGATTGCATTTGCCTCCTGACCCAGCATTGCAGCGTTCTTTGCAGTTGGCTCTGAGAAGTAGAGATGAGCATGATAATAGTGATATGAGGAGGCACCCACATGATGATCTTGATGAAGATGATCACGATGCTGAAGTGGATGACCATGATGAATTTGAGGAGAGTCATGCTTTACATGGTGATAACAGAGGAGTATATGGGATGCCTGTGAAGAGGATGAAACAAGGACAGAACCAGGAAGATTTTAGTTTTGGGAATCCCTCAAATTCCCAGGACTGCAATAGAAGTCCTCATCCTCAAAGTGCTCATGTTGATATGAATCAAGTGTACCCTGTAGGCTCAGCAGAAGATTTGTTACAGAAGCAGTGGATGAGATCCCGCTCACTTCAATTAGAAGAACAGAAGCTACAAATTCAAGAACAGATGTTGGAATTGGAAAAACAGCGGTTCAAGTGGCAAAGATTTTGCAGGAAAAAAGACAGGGACTTGGATAAGCTGAGAATGGAAAATGAGAGGATGAAGCTTGAAAATGAGCGCATGGCTTTGGAATTGAAGCGGAAGGAGATGGGTGCCAGCTATAACTAA 1323 0.4369 MEGNLNMIPGGAPYGGLDLQGATRIHHHQHPHNLHQQHHSHSRQGTMNHSSIHHEVFPLTMGSMQDCDQSISMADYNKGEKGKALTSDEDEPSFNEDAIDGHNDPNRGKKGSPWQRVKWTDKMVRLLITAVSYIGEDAASECGVGGRRKYAILQKKGKWKSVSKVMAERGHYVSPQQCEDKFNDLNKRYKRLNDVLGRGTSCQVVENPALLDMMDHLTEKTKEDVRKILSSKHLFYEEMCSYHNGNRLHLPPDPALQRSLQLALRSRDEHDNSDMRRHPHDDLDEDDHDAEVDDHDEFEESHALHGDNRGVYGMPVKRMKQGQNQEDFSFGNPSNSQDCNRSPHPQSAHVDMNQVYPVGSAEDLLQKQWMRSRSLQLEEQKLQIQEQMLELEKQRFKWQRFCRKKDRDLDKLRMENERMKLENERMALELKRKEMGASYN* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1576 440 MobiDBLite consensus disorder prediction 322 349 - -
Vvi18g1576 440 Coils Coil 402 434 - -
Vvi18g1576 440 Coils Coil 374 397 - -
Vvi18g1576 440 Pfam Myb/SANT-like DNA-binding domain 116 242 IPR044822 -
Vvi18g1576 440 Gene3D - 119 191 - -
Vvi18g1576 440 PANTHER F16F4.11 PROTEIN-RELATED 10 438 - -
Vvi18g1576 440 MobiDBLite consensus disorder prediction 81 114 - -
Vvi18g1576 440 MobiDBLite consensus disorder prediction 78 114 - -
Vvi18g1576 440 MobiDBLite consensus disorder prediction 265 285 - -
Vvi18g1576 440 MobiDBLite consensus disorder prediction 265 349 - -
Vvi18g1576 440 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1576 Vvi-Chr18 19919361 19920683 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi18g1576 Myb_DNA-bind_4 2.5e-23 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1576 - - vvi:100259010 827.394