Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1573 ATGCTGGGGGTCTCAGGCCTGTTGGGAAGCTCGGGCGATGGCGCGGCTGCTGCCGTAGAGCATGAAGGTGGTGGCGGAGGGGGTGGTGGGGGTGGGGGAGGTGGATCAAATTCAGGTGGTTACGGGGAGGAGGATAGGGGGAGAGGAGAAGAGGGTGACCGGGGTTCCGCCGGTAACCGGTGGCCGAGACAGGAGACGTTGGCCTTGTTGAAGATAAGGTCTGATATGGATGTTACTTTTCGTGACTCAAGTCTCAAAGGCCCATTATGGGAAGAGGTTTCCAGGAAACTGGCGGAGCTTGGCTATCATCGAAGCGCCAAGAAATGCAAGGAAAAATTCGAGAACGTCTTCAAGTACCACAGGAGAACCAAAGAAGGCCGAGCCTCCAAGGCCGACGGCAAAACTTATCGGTTTTTCGATCAGTTGGAAGCTTTGGAAACTCAACCCTCACTTGCCTCCCTCCCCCACTCTAAACCTCCAGCTCCGGCAGTGCTTGCCGCCACAATGCCGCTGGCTAACCTTCCAACCACTCTCCCTGAAATCACTGTTCCATCAACATTACCCAACCCTACAAATTCCACAGCAAACCCTACAATTCCCACCATCCCTTCCCCGACGCCACCCACGAGCCGGCATCCTCCACACAACAATGTTCCCACCGCCCATCCAGCCATGGCCGCCAATTTCCTCTCCAATTCCACCTCTTCCTCAACCTCCTCCGACGAAGAATTGGAGAGACGGGGTAAGAGAAAGAGGAAGTGGAAGGCCTTCTTCCAGAGGCTAATGAAGGATGTGATCGAGAGGCAAGAGGAGCTGCAGAAGAGATTCTTGGAAGCCATAGAGAAGCGAGAGCACGACCGAATGGTCCGTGAAGAAGCTTGGAAAATGCAGGAAATGGCGAGAATGAATAGAGAGCACGAGCTTTTAGTCCAGGAGAGATCAATAGCCGCCGCCAAAGACGCAGCGGTCATTGCATTCCTGCAGAAAATATCCGAGCAGCAAAACCCGGTGCAACTGCAAGACAGTACCCCGCCACTGCCGCAGCCCCAGGCGGGACCGCCACAACCGCCGCCACCGCAGCCTCAGCTGCAGCTGGTGAAGGTTTTGGAACCGAGGAAGATGGACAACGGAGGAGGAGCCGAGAATTTAGTTCCAACAAGCTCATCCCGATGGCCGAAAGCCGAAGTCCAAGCCCTGATTCGGCTCCGAACCAGCTTGGATGTCAAGTATCAGGAAAACGGACCCAAAGGGCCCTTATGGGAGGAGATCTCGGCGGGCATGAGAAAGCTGGGATACAACCGGAACGCCAAAAGATGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAGAAAAGACCAGAAGATTCCAAGACGTGTCCATATTTCCACCAGCTTGAAGCGCTGTACAAAGAGAAGAACAAGATGGAGATAAACTCATTCAATCCCAGTTACCCCCTCTTGAAACCCGAAAACCCTATGGTCCCCATAATGGTGCAGCCAGAGCAACAATGGCCTCTACACCCCGAGATGAACAGATCGGAATCGGGAATGGAGGACATGGAAAGCGAAAACAACATGGAGCAGAACCAGGAGGACGACGAAGACGACGGAGAAGAAGAGCAAGAAGGAGATGAGGACGACGAAGATGATGGAGGTGGCTATGAGATAGTAACAAACAAAACATCTTCGATGGGCACGGCTGAGTGA 1731 0.5332 MLGVSGLLGSSGDGAAAAVEHEGGGGGGGGGGGGGSNSGGYGEEDRGRGEEGDRGSAGNRWPRQETLALLKIRSDMDVTFRDSSLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVFKYHRRTKEGRASKADGKTYRFFDQLEALETQPSLASLPHSKPPAPAVLAATMPLANLPTTLPEITVPSTLPNPTNSTANPTIPTIPSPTPPTSRHPPHNNVPTAHPAMAANFLSNSTSSSTSSDEELERRGKRKRKWKAFFQRLMKDVIERQEELQKRFLEAIEKREHDRMVREEAWKMQEMARMNREHELLVQERSIAAAKDAAVIAFLQKISEQQNPVQLQDSTPPLPQPQAGPPQPPPPQPQLQLVKVLEPRKMDNGGGAENLVPTSSSRWPKAEVQALIRLRTSLDVKYQENGPKGPLWEEISAGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLEALYKEKNKMEINSFNPSYPLLKPENPMVPIMVQPEQQWPLHPEMNRSESGMEDMESENNMEQNQEDDEDDGEEEQEGDEDDEDDGGGYEIVTNKTSSMGTAE* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1573 576 MobiDBLite consensus disorder prediction 43 58 - -
Vvi18g1573 576 MobiDBLite consensus disorder prediction 182 250 - -
Vvi18g1573 576 Gene3D - 391 452 - -
Vvi18g1573 576 Gene3D - 61 122 - -
Vvi18g1573 576 ProSiteProfiles Myb-like domain profile. 389 447 IPR001005 -
Vvi18g1573 576 MobiDBLite consensus disorder prediction 182 199 - -
Vvi18g1573 576 MobiDBLite consensus disorder prediction 342 362 - -
Vvi18g1573 576 Coils Coil 518 538 - -
Vvi18g1573 576 ProSiteProfiles Myb-like domain profile. 59 117 IPR001005 -
Vvi18g1573 576 MobiDBLite consensus disorder prediction 200 214 - -
Vvi18g1573 576 MobiDBLite consensus disorder prediction 1 63 - -
Vvi18g1573 576 MobiDBLite consensus disorder prediction 528 560 - -
Vvi18g1573 576 Pfam Myb/SANT-like DNA-binding domain 389 476 IPR044822 -
Vvi18g1573 576 Pfam Myb/SANT-like DNA-binding domain 59 145 IPR044822 -
Vvi18g1573 576 MobiDBLite consensus disorder prediction 515 576 - -
Vvi18g1573 576 SMART sant 57 119 IPR001005 -
Vvi18g1573 576 SMART sant 387 449 IPR001005 -
Vvi18g1573 576 MobiDBLite consensus disorder prediction 335 362 - -
Vvi18g1573 576 CDD GT1 59 124 - -
Vvi18g1573 576 CDD GT1 389 454 - -
Vvi18g1573 576 PANTHER FI21293P1 36 540 - -
Vvi18g1573 576 FunFam Trihelix transcription factor GT-2 61 122 - -
Vvi18g1573 576 FunFam Trihelix transcription factor GT-2 391 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1573 Vvi-Chr18 19898145 19900430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1573 50 512 Trihelix Transcription Factor Family AT1G76880 57.515 2.57e-166 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi18g1573 Myb_DNA-bind_4 7.2e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1573 - - vvi:100241901 883.248