Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1572 ATGGAGAGCATTCCCATGAAACATTTCCATGGAATAGCCAAGGTGCTTGGTTCTGTTGTGGGTGTTTCTGGGGCTATGGTGTTTGCTTTTGTCAAGGGTCCTCCTCTGAAGTTCATGGACTGGTATCCAGAAATCAAGAAGGGAATTTCAGACTCGTCTGTAGAGCAAAACTCCAAAGGAGAGTGGATAAAAGGCTCCCTGATGATGCTTGCAGCCAACACAGCCTGGTCTCTCTGGCTTATTTTACAGGGTCCAATTATCAAGCAGTATCCAGCAAAACTACGCCTCACTACTCTTCAGTGCTTCTTTAGCTGCATACAGTCAGTGGTTCTGGCTGCTGTGGTGGAGAGGAACCCATCATCATGGAAGCTAGCATGGGATCTTAATCTTCTTTCCATCGCCTATTGTGGCATTGTTGTCACTGGGATTACTTATTGGTTGCAAGTTTGGACTATAGAGAAGAAAGGACCCGTCTTCACATCCATGTTCACTCCATTGGCACTAATCATAACAGCTGTCTTCTCAGCATTCTTATGGAAGGAGACCCTTTACTGGGGAAGGTTCATAACCTAA 573 0.4555 MESIPMKHFHGIAKVLGSVVGVSGAMVFAFVKGPPLKFMDWYPEIKKGISDSSVEQNSKGEWIKGSLMMLAANTAWSLWLILQGPIIKQYPAKLRLTTLQCFFSCIQSVVLAAVVERNPSSWKLAWDLNLLSIAYCGIVVTGITYWLQVWTIEKKGPVFTSMFTPLALIITAVFSAFLWKETLYWGRFIT* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1572 190 Pfam EamA-like transporter family 64 189 IPR000620 GO:0016020
Vvi18g1572 190 PANTHER WAT1-RELATED PROTEIN 1 185 IPR030184 GO:0016020|GO:0022857
Vvi18g1572 190 SUPERFAMILY Multidrug resistance efflux transporter EmrE 121 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1572 Vvi-Chr18 19886916 19888111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1572 1 189 Nodulin-like Gene Family AT5G07050 38.579 5.01e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1572 - - vvi:100247036 384.03