Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1569 ATGTCGTTTCGCAGCATTGTTCGTGATGTGAGGGATGGGTTTGGGAGCTTATCAAGGCGGAGTTTTGATGTTAGGCTTCCTGGCCATCATAGAGGGAAATCCCATGGCTCAGTCCATGAGTTGCAGGACCAGCCTCTTGTGGTCCAAAACAGTCGTTGGGCTGGCCTTCCACCTGAGCTACTTCGTGATGTGATTAAGAGGTTGGAGGCAAGCGAGAGTACATGGCCATCTCGCAAGCATGTTGTTGCATGCGCTGCTGTTTGCAGATCCTGGAGAGAAATGTGTAAAGAAATTGTCAAAAGTCCAGAGTTCTCTGGGAAGCTTACTTTCCCCATCTCTCTGAAACAGGCATGGCCTCGGGATGGAACCATTCAGTGCTTCATTAAGAGGGACAAGTCCAACTTGACTTACCACCTTTTCCTTTGCCTTAGCCCTGCTTTGCTTGTTGAAAATGGGAAATTTCTTCTGTCTGCAAAACGAAACAGGAGAACTACTTGCACAGAATATGTAATCTCCATGGATGCCGATAACATATCAAGATCAAGCAGCACTTATATTGGGAAGCTGAGGTCAAATTTCCTTGGCACAAAGTTCATAATTTATGATACACAGCCACCATACAATGGTTCTCAACTCTCCCCACCTGGCCGAACGAGCCGGAGGTTCTACTCGAAAAAGGTTTCTCCTAAAGTCCCAACTGGCAGCTACAACATTGCCCAGGTCACATATGAGCTGAATGTCTTAGGCACCAGGGGGCCACGAAGGATGCACTGCACTATGCATTCAATCCCTGCTTCATCCCTTGAGCCGGGTGGCACTGTGCCTGGCCAGGCTGAGCTCCTCCCTCGCAACCTTGAAGATTCGTTCCGTAGCATCTCCTTCTCAAAATCAATTGATAACTCAACCGAGTTCAGCAGCTCCCGGTTCTCAGACATTATTGGGCCTCGTGATGAAGAGGATGAGGGAAAGGACAGACCACTGGTTCTCCGAAACAAGCCGCCCAGATGGCATGAGCAGCTGCAATGTTGGTGCCTTAACTTCCGGGGGAGGGTAACTGTTGCCTCAGTCAAGAATTTCCAGCTGATTGCTGCCACACAGCCGGCCGCTGGTGCGCCAACACCATCACAGCCTCCAGCCTCTGATCATGACAAGATTATTCTGCAGTTTGGCAAAGTTGGCAAGGATATGTTTACCATGGATTATCGATATCCTCTGTCTGCTTTTCAGGCTTTCGCTATCTGCTTGAGCAGCTTCGACACTAAGTTGGCATGTGAATAG 1278 0.4906 MSFRSIVRDVRDGFGSLSRRSFDVRLPGHHRGKSHGSVHELQDQPLVVQNSRWAGLPPELLRDVIKRLEASESTWPSRKHVVACAAVCRSWREMCKEIVKSPEFSGKLTFPISLKQAWPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRNRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNGSQLSPPGRTSRRFYSKKVSPKVPTGSYNIAQVTYELNVLGTRGPRRMHCTMHSIPASSLEPGGTVPGQAELLPRNLEDSFRSISFSKSIDNSTEFSSSRFSDIIGPRDEEDEGKDRPLVLRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPPASDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1569 425 Pfam Tub family 114 420 IPR000007 -
Vvi18g1569 425 Gene3D Tubby Protein; Chain A 113 419 IPR025659 -
Vvi18g1569 425 PANTHER TUBBY-RELATED 39 423 - -
Vvi18g1569 425 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Vvi18g1569 425 MobiDBLite consensus disorder prediction 312 328 - -
Vvi18g1569 425 MobiDBLite consensus disorder prediction 306 328 - -
Vvi18g1569 425 Pfam F-box domain 53 100 IPR001810 GO:0005515
Vvi18g1569 425 SUPERFAMILY Tubby C-terminal domain-like 102 425 IPR025659 -
Vvi18g1569 425 Gene3D - 48 101 - -
Vvi18g1569 425 CDD F-box_AtTLP-like 53 97 - -
Vvi18g1569 425 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Vvi18g1569 425 PRINTS Tubby superfamily signature 403 425 IPR000007 -
Vvi18g1569 425 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Vvi18g1569 425 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Vvi18g1569 425 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Vvi18g1569 425 PRINTS Tubby superfamily signature 382 401 IPR000007 -
Vvi18g1569 425 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Vvi18g1569 425 ProSitePatterns Tub family signature 2. 410 425 IPR018066 -
Vvi18g1569 425 FunFam Tubby-like F-box protein 48 101 - -
Vvi18g1569 425 FunFam Tubby-like F-box protein 110 425 - -
Vvi18g1569 425 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1569 Vvi-Chr18 19867618 19871772 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1569 1 425 TUB Transcription Factor Family AT1G76900 70.370 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vvi18g1569 Tub 9.7e-118 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1569 K19600 - vvi:100246937 848.58