Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1557 ATGGTGTCGCCGAAGGTGATGGCGTCTTCATCTTCTCGCAATTCGGATCTAAGACGTCGTTCCTCGTCGAAGTCCGTGGCTTCCGACCAGGGGAAGTCGGGACTCGGTTCGATGACGGTGGACGGCCTCCTCCGCAACGTCTACAGCGCCGCTCCCCCCTCAGAGAGCACGCTCGTTGACGCGGAGATCACGTTGGTGGACTCCGGGACGGGAGCGATGGCGGAGCTGGAGGGGGCGCCGGCGGCGAAGACGGTGGATGATGTGTGGAGGGAGATCGTGGCGGGAGGGGGTGGTAGGAGGGAGTGTAAGGAGGAAGTTGAGGACGATATGATGACTTTGGAGGATTTTCTGGCGAAGGCAGGGGCGGTGGAGGAAGAAGGGGAGGATCGGGACGTGAAGGTTCCCCTGGTGACGCAGCGGCTGAGCGGAGGGATTTTCGCTTTTGATCCCGTGCCGCCGAGTCCCATCACGCCGGCGCAGGTGGAGGGTTCGGTGATAGGGTTTGGGAATGGAATGGAGATTGTTGGGGGAAGAGGCAAGAGGAGGGCGCCTGTCTTGGAGCCCTTGGATAAGGCGGCTCAGCAGAAGCAGCGCCGGATGATCAAGAACAGAGAGTCTGCGGCCAGGTCGAGGGAGCGGAAGCAGGCATACCAAGTTGAATTAGAATCATCAGCAGTAAGACTGGAGGAGGAGAATGAGCAGCTATTGAAAGAGAAGGCTGAGCGTTCAAAAGAAAGGTTAAAGCAGCTCATGGAAAAAATTATCCCAGTTGTGGAAAGGAGGAAACCAGCCCGCGTCCTCCGAAGAGTTCGCTCCATGGAGTGGTAG 828 0.5857 MVSPKVMASSSSRNSDLRRRSSSKSVASDQGKSGLGSMTVDGLLRNVYSAAPPSESTLVDAEITLVDSGTGAMAELEGAPAAKTVDDVWREIVAGGGGRRECKEEVEDDMMTLEDFLAKAGAVEEEGEDRDVKVPLVTQRLSGGIFAFDPVPPSPITPAQVEGSVIGFGNGMEIVGGRGKRRAPVLEPLDKAAQQKQRRMIKNRESAARSRERKQAYQVELESSAVRLEEENEQLLKEKAERSKERLKQLMEKIIPVVERRKPARVLRRVRSMEW* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1557 275 PRINTS cAMP response element binding (CREB) protein signature 7 29 - -
Vvi18g1557 275 PRINTS cAMP response element binding (CREB) protein signature 208 228 - -
Vvi18g1557 275 PRINTS cAMP response element binding (CREB) protein signature 190 206 - -
Vvi18g1557 275 PRINTS cAMP response element binding (CREB) protein signature 228 245 - -
Vvi18g1557 275 CDD bZIP_plant_BZIP46 195 241 - -
Vvi18g1557 275 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 193 245 IPR004827 GO:0003700|GO:0006355
Vvi18g1557 275 SUPERFAMILY Leucine zipper domain 195 246 IPR046347 GO:0003700|GO:0006355
Vvi18g1557 275 SMART brlzneu 191 253 IPR004827 GO:0003700|GO:0006355
Vvi18g1557 275 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 193 253 - -
Vvi18g1557 275 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 198 213 IPR004827 GO:0003700|GO:0006355
Vvi18g1557 275 Pfam bZIP transcription factor 193 252 IPR004827 GO:0003700|GO:0006355
Vvi18g1557 275 Coils Coil 214 253 - -
Vvi18g1557 275 Gene3D - 193 253 - -
Vvi18g1557 275 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 24 249 IPR043452 GO:0003700|GO:0045893
Vvi18g1557 275 MobiDBLite consensus disorder prediction 1 38 - -
Vvi18g1557 275 MobiDBLite consensus disorder prediction 1 16 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1557 Vvi-Chr18 19680536 19687170 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1557 1 275 bZIP Transcription Factor Family AT5G44080 46.483 5.05e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi18g1557 bZIP_1 7.9e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1557 K14432 - vvi:100262305 507.294