Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1556 ATGGATTGCGATGAGTTTCGATCGATCTTGGAGAGTTCGGGTGTGGATGTGTGGACATTGATAGAAACAGCAGTGTCTGTAGCGTCTGTGGATTACAGCGAAGAATTCAAGGGCCGAAGAGATAGCATCGTCGAACGGCTTTATACGCCTGTGGTTTCGCGATGCCTGAACTGCGATCGCGATCGTATTCATAAGCCAAATGGTGATCGGTCTGTGAAGGAAAAGATGGATCAGTTGCAAGACGAGTCCTGGATTGAGACGCCAGAGTCAGTGGAGAGGGATAGAGATGGATCAATCGATGAAGAGCAGTCTAAGATTCTTGCGATCAAGGAGCGCCTTGAAGATCCTGATCAGTTAGAGGATTCTCTGGTTGATTTGCTTCAGAGTCTCGCAGACATGGATATCACATTTAAAGCTCTTAAGGAAACTGACATCGGACGGCACGTGAACCGATTACGGAAGCATCCATCCAATGAAGTTCGAAGGCTGGTTAAGCAACTCGTCAGGAAGTGGAAAGATCTGGTTGACGAATGGGTGAAACTGAGTACACCTGGGGAAACTACAGCTTCTGCAATTGTTGCTGATGGAGACTCTCCTCAACAGAACCACCTGAAAAGCACCTCCAATGTTCATCACCAGGTACCTGATTTTGCATATTCTCCAAATCCACACAATGGAAGCTCTGGTTCTGACAAGAACAATGTGGAACTTGAACCGAAAAGGAAGGCAGTTCCCCGAAGAGAAACTCCAAATAAGCCAAACCAAACGCCTCCCATTCCTACTTCTGTTGCTCTAAATAAACAGAGGGAGCAGAAAGACAGCCTCGTAGATGAAGAAAAATTGGCTTCGGCTAGAAGGCGGCTTCATGAGAATTATCAGGAAGCTCAAAATGCAAAAAAACAGAGAACAATTCAAGTGATGGATATTCATGACATTCCCAAACCCAAGAATACATTCTTTGCCAAGAACAGGGGAGGCGTTCAGGCAAAACATTGGTGA 999 0.4585 MDCDEFRSILESSGVDVWTLIETAVSVASVDYSEEFKGRRDSIVERLYTPVVSRCLNCDRDRIHKPNGDRSVKEKMDQLQDESWIETPESVERDRDGSIDEEQSKILAIKERLEDPDQLEDSLVDLLQSLADMDITFKALKETDIGRHVNRLRKHPSNEVRRLVKQLVRKWKDLVDEWVKLSTPGETTASAIVADGDSPQQNHLKSTSNVHHQVPDFAYSPNPHNGSSGSDKNNVELEPKRKAVPRRETPNKPNQTPPIPTSVALNKQREQKDSLVDEEKLASARRRLHENYQEAQNAKKQRTIQVMDIHDIPKPKNTFFAKNRGGVQAKHW* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1556 332 SMART TFS2_5 106 177 IPR003617 GO:0005634
Vvi18g1556 332 CDD TFIIS_I 106 176 - -
Vvi18g1556 332 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 96 189 IPR035441 -
Vvi18g1556 332 MobiDBLite consensus disorder prediction 234 248 - -
Vvi18g1556 332 MobiDBLite consensus disorder prediction 213 273 - -
Vvi18g1556 332 MobiDBLite consensus disorder prediction 66 99 - -
Vvi18g1556 332 Coils Coil 278 301 - -
Vvi18g1556 332 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 104 183 IPR035441 -
Vvi18g1556 332 ProSiteProfiles TFIIS N-terminal domain profile. 101 178 IPR017923 -
Vvi18g1556 332 Pfam TFIIS helical bundle-like domain 126 175 IPR017923 -
Vvi18g1556 332 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 332 IPR044790 -
Vvi18g1556 332 MobiDBLite consensus disorder prediction 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1556 Vvi-Chr18 19675813 19677806 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vvi18g1556 Med26 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1556 - - vvi:100262291 671.774