Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1543 ATGGAAAACCTTAGGAGGAGAAGAATGTCGCACCGGAAGTTTGAGCATCCCAGGCATGGTTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCTTTTTGGGTTACAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTCCTATGGTCATAGTTGGAGTGGTGGCTTATGTTAAGACTCCACGTGGCCTTCGTTCTCTGAACACAGTTTGGGCTCAGCACCTGAGTGAGGAGGTGAAGCGTAGGTTCTATAAGAACTGGTGCAAATCCAAGAAGAAGGCTTTCACCAAGTACTCCAAGCAGTATGAGACTGAAGAAGGGAAGAAAAGCATCCAAGCACAACTGGAGAAAATGAAAAAATATGCTTCTGTCATTCGGGTTTTGGCTCACACTCAGATTAGGAAGATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCCAGGTCAATGGTGGAACCATTGCTCAGAAAGTGGATTATGCTTATGGTTTCTTTGAGAAACAAGTCCCTGTGGATGCCATTTTCCAGAAGGATGAGATGATTGACATCATTGGTGTGACTAAAGGTAAGGGTTATGAAGGTGTTGTCACCCGTTGGGGTGTCACCCGCCTTCCCCGTAAGACTCACAGGGGTTTGAGGAAAGTGGCATGTATTGGTGCTTGGCATCCTGCTAGAGTTTCATTCACAGTTGCCAGGGCTGGTCAGAATGGATACCACCATCGTACTGAAATGAACAAGAAGATTTACAAGCTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGTGAAGGATGATTATGTGATGATCAAGGGTTGCTGTGTTGGGCCTAAGAAGAGAGTTGTTACGCTTCGTCAGTCTCTGCTCAAGCAGACATCTCGTGTGGCCCTTGAGGAGATCAAGCTCAAGTTCATTGATACTTCCTCAAAGTTTGGGCATGGGCGTTTCCAGACTACACAAGAGAAGCAGAAGTTCTATGGACGGATGAAAGCATAA 1194 0.469 MENLRRRRMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIVETPPMVIVGVVAYVKTPRGLRSLNTVWAQHLSEEVKRRFYKNWCKSKKKAFTKYSKQYETEEGKKSIQAQLEKMKKYASVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAQKVDYAYGFFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKIEQESHTALTEFDRTEKDITPMGGFPHYGVVKDDYVMIKGCCVGPKKRVVTLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRMKA* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1543 397 FunFam Ribosomal protein L3 273 397 - -
Vvi18g1543 397 ProSitePatterns Ribosomal protein L3 signature. 220 243 IPR019926 -
Vvi18g1543 397 Gene3D Ribosomal protein L3, domain 3 9 282 IPR044892 -
Vvi18g1543 397 FunFam 60S ribosomal protein L3 52 172 - -
Vvi18g1543 397 SUPERFAMILY Translation proteins 12 378 IPR009000 -
Vvi18g1543 397 MobiDBLite consensus disorder prediction 1 22 - -
Vvi18g1543 397 Gene3D Translation factors 52 393 - -
Vvi18g1543 397 Gene3D - 91 215 - -
Vvi18g1543 397 FunFam 60S ribosomal protein L3 91 215 - -
Vvi18g1543 397 Pfam Ribosomal protein L3 9 378 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vvi18g1543 397 FunFam 60S ribosomal protein L3 234 282 - -
Vvi18g1543 397 FunFam 60S ribosomal protein L3 9 89 - -
Vvi18g1543 397 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 9 392 IPR045077 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1543 Vvi-Chr18 19526695 19530962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1543 9 395 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 87.597 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1543 K02925 - vvi:100260533 788.104