LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g1535	ATGTGCAAACTGAAGGTGGCGAATCCACGAGACTCAGGCGAGTACGTCAGATTTCGGGCGGCTGGTGGTGGAAATGAAGAGGTAGTGCCACCGCCGCCGCAGCAATCGGAGGAACCCGTGCCGGTGGTTTCTGAAACCATGTATTCAGGGTACAGCAGAGCTTCGGAGATGTCGGCGATGGTGTCGGCGTTGACGCATGTGGTTTCTGGGCAGCGAGCCGGAGATTATGGTTATGCGTCAGGGTTTGTTGGAGCGGCTGGTGGCGTGACGTCGAGTTTCGGGAGTGGTGGTTCCGGGATTTATACTTCTTCATCGCCTTTGTCAGCTTACTCTTCTTCTTCTGGTTCTGGTTCTGCTTCCGGTTCTGCATCTTGGGTTGGACAGAAGAGAGGACGTGAACTCGAAGCTGCAACTCAATATTCTGAAACTGTTCCCAGGGTTTATCGAGGGTTTGGTGATTTCAGAGTTTCTCATAGCGAGTCATCATCTGGTGCAACTGGGACAGAAGAAACTACGAATATGCTGCCACCAACCACCGCCATTCCTGCAACGCCCTCAACTGAACCTGCTTCAAACCAAGAAAGTGGGGAGCGAAGAAGAAGATACAGAGGTGTGAGGCAGAGGCCATGGGGGAAATGGGCGGCTGAGATAAGGGACCCTCACAAAGCTGCGAGAGTGTGGCTGGGTACATTCGATACAGCCGAAGCAGCTGCCAGAGCTTATGATGAAGCTGCGCTCAGATTCAGAGGCAACAGAGCCAAGCTCAACTTCCCAGAAAACGTCAGATTAATGCCACCTCTCCAGGTTTCTCCGGCGACCCAGCTGTCCATCTCCGGTCCGCCTGCAACCCAATTGCCGGTTTCTTCATCGCCGCCGCCCTTTTTTCAGGGCCAGGCCTTGCAGAACCCCGACATTGTCAGAGACTACTGGGAATACTCCCAGTTGCTGCAGAGCTCCGGCGACTTCCATGGACAACAACCCACTAGTTTGTTAGAGCAGATGTTCTATTCCCAATCCTTGGCTTCTCTCCAATCCTCCGCTTCTCTCAGCTCACCATCAATATCATTTTCATCGTCATCTTCATCTTCATCCACATCTTCACTCTCATCCAGATTCTCTTCATCTTCAACTCCATATCCCCTGCTTTTTCCCGAGCAGCAGATGGGATATCCTCAGCCACCAGGAAATCAAGGCCAGGGTAGTAGCTCAGATTTTCCGGCGCCGTCATGGACGGGCTCCGGCCACTACCCCTCCTCTTCCAGTTGA	1266	0.5308	MCKLKVANPRDSGEYVRFRAAGGGNEEVVPPPPQQSEEPVPVVSETMYSGYSRASEMSAMVSALTHVVSGQRAGDYGYASGFVGAAGGVTSSFGSGGSGIYTSSSPLSAYSSSSGSGSASGSASWVGQKRGRELEAATQYSETVPRVYRGFGDFRVSHSESSSGATGTEETTNMLPPTTAIPATPSTEPASNQESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRLMPPLQVSPATQLSISGPPATQLPVSSSPPPFFQGQALQNPDIVRDYWEYSQLLQSSGDFHGQQPTSLLEQMFYSQSLASLQSSASLSSPSISFSSSSSSSSTSSLSSRFSSSSTPYPLLFPEQQMGYPQPPGNQGQGSSSDFPAPSWTGSGHYPSSSS*	422

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g1535	421	ProSiteProfiles	AP2/ERF domain profile.	201	258	IPR001471	GO:0003700\|GO:0006355
	Vvi18g1535	421	PRINTS	Ethylene responsive element binding protein signature	202	213	IPR001471	GO:0003700\|GO:0006355
	Vvi18g1535	421	PRINTS	Ethylene responsive element binding protein signature	224	240	IPR001471	GO:0003700\|GO:0006355
	Vvi18g1535	421	MobiDBLite	consensus disorder prediction	278	297	-	-
	Vvi18g1535	421	SUPERFAMILY	DNA-binding domain	201	259	IPR016177	GO:0003677
	Vvi18g1535	421	Gene3D	AP2/ERF domain	200	260	IPR036955	GO:0003700\|GO:0006355
	Vvi18g1535	421	SMART	rav1_2	201	264	IPR001471	GO:0003700\|GO:0006355
	Vvi18g1535	421	MobiDBLite	consensus disorder prediction	158	192	-	-
	Vvi18g1535	421	CDD	AP2	209	260	IPR001471	GO:0003700\|GO:0006355
	Vvi18g1535	421	FunFam	Ethylene-responsive transcription factor 2	200	259	-	-
	Vvi18g1535	421	MobiDBLite	consensus disorder prediction	358	382	-	-
	Vvi18g1535	421	MobiDBLite	consensus disorder prediction	158	205	-	-
	Vvi18g1535	421	MobiDBLite	consensus disorder prediction	390	421	-	-
	Vvi18g1535	421	PANTHER	DNA-BINDING DOMAIN	163	363	IPR044808	GO:0003700\|GO:0009873
	Vvi18g1535	421	MobiDBLite	consensus disorder prediction	20	41	-	-
	Vvi18g1535	421	MobiDBLite	consensus disorder prediction	358	421	-	-
	Vvi18g1535	421	Pfam	AP2 domain	201	250	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi18g1535	Vvi-Chr18	19427229	19429012	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi18g1535	177	263	AP2-EREBP Transcription Factor Family	AT5G61890	68.539	1.32e-35	130

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Vvi18g1535		AP2	8.4e-15	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g1535	-		-	vvi:100262406	646.351