Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1527 ATGCAATGTGGAATGCTTTTGTTGTGTTCTAGACACATAAAGCAGAAGGAAAATGATATTGCCATCTGTGAATGCAAGTACAAAGCCAATGATCCAGATAGTGCATGTGGAGAGAGGTGCTGGAATGTATTAACTAGCATAGAGTGCACGCCTCGCTATTGTCCATGCAGCATCCATTGCAAGAATCAGAGATTTCAGAAACGTGAATATGCTAAAACGAAGTTGTTCAGGGCTGAAGGCCGTGGGTGGGGTCTTTTGGCTACAGAGAACATTAAGGCTGGAGAATTTGTTATGGAGTACTGTGGAGAAGTGATTTCACGGACAGAAGCAAGGGGAAGGTCCCAAGTTTATGTATCACAAGGCCTTAAGGATGTATATATAATTCCTCTGAATGCTAGGGAATGCATTGATGCAACCAAAAAAGGAAACCTGGCTAGGTTTATAAACCACTCATGCCAACCAAATTGTGAGACAATGAAGTGGTCAGTTTTGGGGGAAGATAGAGTTGGCATTTTTGCATTGAGAAATATATCAGTTGGAACGGAACTGACTTACAGTTACAACTTTGAATGGTATAGTGGTGCCAAGGTTCGCTGCCTTTGTGGGGCAACCAGATGCTCAGGTTTTCTTGGGGGGAAGCCTTGTGGATTCCAGGAGGATTCGTTTGCATGGGAGAAGAACAATGAGAGATACTCAGGGGGGGATAAACCTTCTTCTTCGCTGGGGCCAAAAAAAAGATTAAAACATGATCATAATGGAGGGTCAAGACCCCTCCCAGGAAAGCAAGTTGATGCAAAATATGTTGCCCAATTCTTAGCATCAAAGGATGCTCAAGAGGAGGTCTTAAAAAATGAGGAAGAAAGGAAGGAGGCCTTGTCCCATCTGGCCTCTGTGTACAGGGAGATTGAGCCTGCTATAGAAGATCATGATATGTATGGTCCAGCCAATGTGCTAACTGATGTGGCAGAGCAATGGATAGGGGCCAGCTGCCGGAAACTGAAGGCAGAGTTTAACCTTCATTCCTCTATCATCAGAAATCTTATCTGCCCACCTCAAAGAGCACCAGAAGATGCAAAGCCCTCAGCAGGAGACCCTGATCATGAAATCAAGTGA 1113 0.4438 MQCGMLLLCSRHIKQKENDIAICECKYKANDPDSACGERCWNVLTSIECTPRYCPCSIHCKNQRFQKREYAKTKLFRAEGRGWGLLATENIKAGEFVMEYCGEVISRTEARGRSQVYVSQGLKDVYIIPLNARECIDATKKGNLARFINHSCQPNCETMKWSVLGEDRVGIFALRNISVGTELTYSYNFEWYSGAKVRCLCGATRCSGFLGGKPCGFQEDSFAWEKNNERYSGGDKPSSSLGPKKRLKHDHNGGSRPLPGKQVDAKYVAQFLASKDAQEEVLKNEEERKEALSHLASVYREIEPAIEDHDMYGPANVLTDVAEQWIGASCRKLKAEFNLHSSIIRNLICPPQRAPEDAKPSAGDPDHEIK* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1527 370 MobiDBLite consensus disorder prediction 351 370 - -
Vvi18g1527 370 Pfam SET domain 82 188 IPR001214 GO:0005515
Vvi18g1527 370 ProSiteProfiles Post-SET domain profile. 195 211 IPR003616 -
Vvi18g1527 370 FunFam Histone-lysine N-methyltransferase 4 223 - -
Vvi18g1527 370 ProSiteProfiles SET domain profile. 71 188 IPR001214 GO:0005515
Vvi18g1527 370 Pfam AWS domain 31 68 IPR006560 GO:0005634|GO:0042054
Vvi18g1527 370 MobiDBLite consensus disorder prediction 241 255 - -
Vvi18g1527 370 PANTHER SET DOMAIN PROTEINS 13 283 - -
Vvi18g1527 370 SUPERFAMILY SET domain 18 208 IPR046341 -
Vvi18g1527 370 MobiDBLite consensus disorder prediction 228 261 - -
Vvi18g1527 370 SMART PostSET_3 195 211 IPR003616 -
Vvi18g1527 370 Gene3D SET domain 5 230 IPR046341 -
Vvi18g1527 370 ProSiteProfiles AWS domain profile. 18 69 IPR006560 GO:0005634|GO:0042054
Vvi18g1527 370 SMART shorttest3 18 70 IPR006560 GO:0005634|GO:0042054
Vvi18g1527 370 Coils Coil 268 295 - -
Vvi18g1527 370 SMART set_7 71 194 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1527 Vvi-Chr18 19281686 19290355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1527 48 210 C2H2 Transcription Factor Family AT2G23740 35.359 6.87e-23 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi18g1527 SET 1.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1527 - - vvi:100853610 751.895