Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1526 ATGATAACTACAAAATATTATTGGATCTTTATGTTCATGCATCTACACATAAAGCAGGAGGAGGATGATATCACTATTTGTGAATGCAAGTACAACACCAATGATCCAGATAGTGCATGTGGAGAGAGGTGCTTGAATGTATTAACTAGCATAGAGTGCACGCCTCACTATTGTCCTTGCAGTGTGCATTGCAAAAATCAGAGATTTCAGAAGCATGAATATGCTAAGACAAAGTTGTTCAGGACTGAAGGCCGAGGGTGGGGTCTTCTTGCCAATGAGGACATTAAGGCAGGAAGATTTATTATTGAGTACTGTGGGGAGGTAATTTCATGGAATGAAGCAAGGGAAAGGTCCCTAGCTTATGCATCTCAAGGCATCAACGATGCGTATATAATTTCTCTGAATGCCAGGGAATGCATTGATGCCACCAAAAGTGGAAGCCAGGCTAGATTTATAAACCATTCATGTGAACCAAATTGTGAGACAAGGAAGTGGTCAGTTTTGGGGGAAGTTAGAATTGGCATATTTGCAATGAGAGATATATCCATTGGAACGGAACTGACTTATGATTATAACTTTCAATGGTATGGTGGTGCCAAGGTTCATTGTCTCTGTGGTGCCACCAGCTGCTGTGGTTTTCTTGGGGCGAAGTCTCGTGGATTCCAGGATACCGATGTATGGGAGGACATTGATGAAAGATGCTCACTGGAAGATAAACCTTCCTTATCCATGCGACCAGAGTCCATGCCAAAGAAAAGGTCAAAAAATAATCATAATGGACCATCAAGACCTCTCAACAGAGAGCAAGTTGATGCTAAATTTGTTGCCCAATTCTTAGCATCAAAGGAAGCTCAAGAGGAGATCCTAAAATATGAGGAACAAAGGGAGGAGGCCTCATCCCATCTCCACTTGTTATACAAGGATGAAGTTGAACCTTCCATAAAAGAAAATGAAATATATGGTATAGATGGTGTGCCAGCCAGTGTGGCTGAGAAATGGATAAGGGCTAGCTGCATGAAACTCAAGGCAGAGTTTAATCTTCATTCCTCCATTATCAGAAATATTGCCTGCACACCTCAAAGAGCACCGGATGAAGCACAACCTTCTGAAGGAGAACCCAAGCCTTGA 1128 0.4211 MITTKYYWIFMFMHLHIKQEEDDITICECKYNTNDPDSACGERCLNVLTSIECTPHYCPCSVHCKNQRFQKHEYAKTKLFRTEGRGWGLLANEDIKAGRFIIEYCGEVISWNEARERSLAYASQGINDAYIISLNARECIDATKSGSQARFINHSCEPNCETRKWSVLGEVRIGIFAMRDISIGTELTYDYNFQWYGGAKVHCLCGATSCCGFLGAKSRGFQDTDVWEDIDERCSLEDKPSLSMRPESMPKKRSKNNHNGPSRPLNREQVDAKFVAQFLASKEAQEEILKYEEQREEASSHLHLLYKDEVEPSIKENEIYGIDGVPASVAEKWIRASCMKLKAEFNLHSSIIRNIACTPQRAPDEAQPSEGEPKP* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1526 375 ProSiteProfiles AWS domain profile. 22 73 IPR006560 GO:0005634|GO:0042054
Vvi18g1526 375 FunFam Histone-lysine N-methyltransferase 4 227 - -
Vvi18g1526 375 MobiDBLite consensus disorder prediction 238 254 - -
Vvi18g1526 375 SUPERFAMILY SET domain 19 212 IPR046341 -
Vvi18g1526 375 ProSiteProfiles SET domain profile. 75 192 IPR001214 GO:0005515
Vvi18g1526 375 Gene3D SET domain 8 231 IPR046341 -
Vvi18g1526 375 SMART shorttest3 22 74 IPR006560 GO:0005634|GO:0042054
Vvi18g1526 375 Pfam SET domain 86 192 IPR001214 GO:0005515
Vvi18g1526 375 Pfam AWS domain 35 72 IPR006560 GO:0005634|GO:0042054
Vvi18g1526 375 ProSiteProfiles Post-SET domain profile. 199 215 IPR003616 -
Vvi18g1526 375 PANTHER SET DOMAIN PROTEINS 18 273 - -
Vvi18g1526 375 SMART set_7 75 198 IPR001214 GO:0005515
Vvi18g1526 375 Coils Coil 281 301 - -
Vvi18g1526 375 MobiDBLite consensus disorder prediction 238 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1526 Vvi-Chr18 19262862 19274847 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1526 57 214 C2H2 Transcription Factor Family AT2G23740 36.517 2.91e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi18g1526 SET 5.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1526 - - vvi:100853651 756.133