Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1525 ATGGATCAACAAATTGAAGGATTACCGGAGTACATACATATTAATCGAAATGATTTCTCTTATAGAAAACATATAAAGCAGCAGGAGGAGGATATTGCAATATGTGAATGCAAGTATGATGCTAATGATCCTGATAGTGCATGTGGAGAAGCATGCTTGAACGTACTAACCAGCACAGAGTGCACACCTGGTTATTGCCGTTGCGGTTTATTTTGCAAAAATCAGAGATTTCAGAAATGTGAATATGCTAAAACAAAGTTGTTCAGAACGGAAGGTCGTGGATGGGGTCTTCTAGCTGATGAAAACATTAAGGCTGGACGATTTGTTATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCAAGGGGAAGGTCCCAAGTTTATGCATCTCTAGGTCTCAAGGATGCATTTATAATTTCTCTTAATGGTAGTGAATGTATTGATGCCACTAAAAAGGGTAGCCTTGGCAGATTTATAAATCATTCATGCCAACCTAATTGTGAAACAAGGAAGTGGACAGTTTTGGGGGAAGTTAGAGTTGGCATATTTGCAAAGCAAGACATATCTATTGGAACAGAACTTGCATATAATTATAATTTTGAATGGTATGGTGGGGCTAAGGTTCGCTGCCTTTGTGGGGCAATCAGCTGCTCTGGTTTTCTTGGGGCAAAGTCTCGTGGATTCCAGGAGGATACTTATCTTTGGGAGGATGGCGATGACAGATACTCAGTTGAGAAAATCCCACTCTATGATTCTGCAGAGGATGAGCCTTCCTCCAAGCTCCCCAGAGTCATGGATTACTCTAAACCTGAATTTATTTCTCATGGGAAAGTTGAATACACCACAGCAGTGGATGCTAGTGTGGAATATGATACAAGTGTGCGATACGAGCATCAATTGGAATCCACTGAACTTGTTGTTGAGGCAGTTGATTCAGTTCCAGTAGACTTGGTCATAAATGAGATAAAAACTGAAGTAAGTGAAGAGACAAAATTGTTTACCGATGGTACTCAACAGGCCTTTCCTCAAAAGAATGCAATGATACCTCACATCCAAAGTAATAGTGCAAGCCAGAACAATCACATTGGGCCAGGGCATGTGGCAAAAAAGAGATCGAAACATTTTCCTAATGGAAGGTCAAAACCTGTGGCCCAAAAGCAAGTTGATGCAAAATTTGTTGCCCAATTCTTAGGATCAGAGGAGGCTCGTGAGGAGGTCTTCAAATATGAGGAAGAAAAGAATCAGGCCTCTTCACGTCTTGACTCCATATATGATGAAATTCGACCTGCAATTGAAGAACATGAGAGAGATAGTCAAGATAGTGTCCCAACTGAGGTAGCTAGGAAGTGGATAGGGGCCAACTGCAGTAAAATGAAGGCAGACTTTAATCTTTACTCCTCTATCATCAGAAACATTGTCTGTAATCCCCGAAAACCACAAGGTGAAGCAAAAGCTTCTGAAGGAGGAGACAATGAGAATGAAACAAAGGATTTGATAACCTAA 1506 0.4064 MDQQIEGLPEYIHINRNDFSYRKHIKQQEEDIAICECKYDANDPDSACGEACLNVLTSTECTPGYCRCGLFCKNQRFQKCEYAKTKLFRTEGRGWGLLADENIKAGRFVIEYCGEVISWKEARGRSQVYASLGLKDAFIISLNGSECIDATKKGSLGRFINHSCQPNCETRKWTVLGEVRVGIFAKQDISIGTELAYNYNFEWYGGAKVRCLCGAISCSGFLGAKSRGFQEDTYLWEDGDDRYSVEKIPLYDSAEDEPSSKLPRVMDYSKPEFISHGKVEYTTAVDASVEYDTSVRYEHQLESTELVVEAVDSVPVDLVINEIKTEVSEETKLFTDGTQQAFPQKNAMIPHIQSNSASQNNHIGPGHVAKKRSKHFPNGRSKPVAQKQVDAKFVAQFLGSEEAREEVFKYEEEKNQASSRLDSIYDEIRPAIEEHERDSQDSVPTEVARKWIGANCSKMKADFNLYSSIIRNIVCNPRKPQGEAKASEGGDNENETKDLIT* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1525 501 Pfam AWS domain 43 80 IPR006560 GO:0005634|GO:0042054
Vvi18g1525 501 SMART PostSET_3 207 223 IPR003616 -
Vvi18g1525 501 PANTHER SET DOMAIN PROTEINS 8 437 - -
Vvi18g1525 501 Gene3D SET domain 1 234 IPR046341 -
Vvi18g1525 501 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Vvi18g1525 501 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Vvi18g1525 501 MobiDBLite consensus disorder prediction 477 501 - -
Vvi18g1525 501 MobiDBLite consensus disorder prediction 484 501 - -
Vvi18g1525 501 Pfam SET domain 94 200 IPR001214 GO:0005515
Vvi18g1525 501 MobiDBLite consensus disorder prediction 355 385 - -
Vvi18g1525 501 SMART set_7 83 206 IPR001214 GO:0005515
Vvi18g1525 501 FunFam Histone-lysine N-methyltransferase 1 235 - -
Vvi18g1525 501 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0042054
Vvi18g1525 501 SUPERFAMILY SET domain 9 220 IPR046341 -
Vvi18g1525 501 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0042054
Vvi18g1525 501 Coils Coil 400 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1525 Vvi-Chr18 19242756 19260558 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1525 65 222 C2H2 Transcription Factor Family AT2G23740 34.091 9.09e-21 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi18g1525 SET 2.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1525 - - vvi:100853689 1030.78