Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1524 ATGCCTCCTGCATTTGAGGCTATTCTAGCTGCCACTGCCAGCTTTTTCTTCATTACTCTCTTCCTTGCGGTTATTTTAATCGTTTGCCGAGGACTCAAACAGCGCCGGAGCTCTGAACCCCGGACCCGTCCCATTCAGAGTTCCAGCCTCACCTCTATCTCGGTTGGCGAGAGCGCCACGTTTGACCCCTCGCTGAAACGGATCTCCATGGGGGAGCTCCTCGCTGCCACCAGGAACTTTGCCTCCGACGGCATCATCGGGGACGGCAGCTTCGGCATGGTTTACAAGGCCTGCCTCTCCAACGGCGTCACCGTCGCCGTCAAGAAGCTCAGCCCCGACGCCTTCCAGGGATTCCGGGAGTTCCGGGCCGAGACCGAAACCCTAGCCAAGCTCCAGCACCGGAATATCGTGCAAATCCTCGGGTACTGCGTTTCGGGCTCCGATAGGGTCCTCATCTACGAGTTCATCGAGAAAGGGAGCCTCGATCAATGGCTTCACGACACGTCCGAGGACCAGCAACTTTCCACCCCGCGTTTGCCGTTATCTTGGGAAACGAGACTAAAGATTATCAGAGGAGTTGCAGACGGTTTATCATATCTCCACAATCTGGACACCCCAATCATTCATAGAGATATCAAGGCCAGCAATGTGCTATTAGACTCGGAATTCGAACCACACATTGCTGATTTTGGCTTAGCTAGGAGAATTGAGTGGTCGCATTCCCATGTCTCCACCCAGGTCGCCGGCACCATGGGCTACATGCCCCCGGAGTACCGAGAAGGCGTGACCGTGGCAACAGTGAAGGCGGATGTGTACAGTTTTGGGATACTGATGATTGAGATCGCGACTGGGAGGCGCCCCAATTTGCCCACCCGCCTGGATGGTACAGACGTGGGGATAGTGCAATGGGCGCGGAAAATGGTGGCCCAGGAAAGGCATATGGAGATGGTTGATTCCAATGTTTCCAGGGAAGGGTTGAGAGAAAACGAGGTCAGGGAATTGTTCAGAATTGCCCATTTGTGTACCAGTGAGATATCCAGAGACCGCCCACCTATCAGTTTGGTGGTTGATTTGTTGTACCAGCTTTTCTCATGA 1095 0.5416 MPPAFEAILAATASFFFITLFLAVILIVCRGLKQRRSSEPRTRPIQSSSLTSISVGESATFDPSLKRISMGELLAATRNFASDGIIGDGSFGMVYKACLSNGVTVAVKKLSPDAFQGFREFRAETETLAKLQHRNIVQILGYCVSGSDRVLIYEFIEKGSLDQWLHDTSEDQQLSTPRLPLSWETRLKIIRGVADGLSYLHNLDTPIIHRDIKASNVLLDSEFEPHIADFGLARRIEWSHSHVSTQVAGTMGYMPPEYREGVTVATVKADVYSFGILMIEIATGRRPNLPTRLDGTDVGIVQWARKMVAQERHMEMVDSNVSREGLRENEVRELFRIAHLCTSEISRDRPPISLVVDLLYQLFS* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1524 364 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 359 - -
Vvi18g1524 364 SUPERFAMILY Protein kinase-like (PK-like) 57 360 IPR011009 -
Vvi18g1524 364 Gene3D Phosphorylase Kinase; domain 1 43 155 - -
Vvi18g1524 364 CDD STKc_IRAK 86 359 - -
Vvi18g1524 364 Gene3D Transferase(Phosphotransferase) domain 1 156 362 - -
Vvi18g1524 364 ProSiteProfiles Protein kinase domain profile. 80 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1524 364 SMART serkin_6 80 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1524 364 Pfam Protein tyrosine and serine/threonine kinase 85 357 IPR001245 GO:0004672|GO:0006468
Vvi18g1524 364 FunFam Phytosulfokine receptor 2 41 155 - -
Vvi18g1524 364 FunFam Phytosulfokine receptor 2 156 363 - -
Vvi18g1524 364 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524
Vvi18g1524 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1524 Vvi-Chr18 19224023 19225117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1524 16 362 Receptor kinase-like Gene Family AT5G07280 41.209 5.49e-80 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vvi18g1524 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1524 - - vvi:100854787 717.998