Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1521 ATGGGCAGCGTTCAGGCCAAATCTTCCATGAATTCACCACCTAGAGGTTTGGAGAAGTTGAAAATAGATAATGGGTATGTGTCAAAAGCGGCCGGACGGAGATCAACTGGTCAGAGGTACCCGGATAAGGACTCTGGTCGGGTTTTAAGGCCTGAATCTGGAAGTAATAAGGTTTTGTTTGTGAGTGGTGATGGTGGTGGGGAGGAGAAATCCATTAATAAAGAGGAAAAGAGAGATGATGGCGGCAGTGAGGTTTCTCACGTTAAAGGGAAAGAAATAGTTGATGGGTGGCCTAATTGGCTCACTGATAATATTCCTAAAAAGGCTCTGGCTGGCTTGGTTCCAAGGAGTGCTGAATCCTTTGAGAAACTCGATAAGATAGGCCAGGGCACCTACAGTAATGTGTATAAAGCTCGGGACAAAGACACTGGAAAAATTGTTGCCTTGAAGAAGGTCAGGTTTGAAACAACTGAACCTGAGAGTGTCAAGTTTATGGCCCGAGAAATTACGATACTACGAGAGCTGGATCATCCCAATGTCATAAAGCTTGAAGGGTTGGTAACATCAAGGATGCAATATAGTCTCTATTTGGTTTTTGACTTCATGCAGTCAGATTTGGCCAGAGTCATTGCCTGTCCTGAAAGGCTTACCGAACCACAGATCAAGTGTTATATGCATCAACTGCTCTCTGGTCTGCAGCATTGCCATGAGAGGGGGATTCTACACCGAGACATAAAGGGGTCCAACCTGTTGATTGATAAAGATGGGAGGCTAAAGATAGCGGATTTTGGGCTTGCGAAACATTTTTATCCTAACCGAAAGCATCCCCTCACAAGCAAGGTTGTGACCCTTTGGTATAGAGCACCTGAGCTATTATTAGGTGCTACAGATTATGGAGTTGGCATTGATCTATGGAGTGCTGGGTGTCTCTTGGCAGAGATGTTCTTGGGGAGGCCAATTATGCCTGGTAGGACTGAGGTTGAGCAAATTCATAGGATTTTCAAGTTATGTGGCACACCCTCAGAGGAATACTGGAAAAAACTAAGAATGCCCACAACCTTCCGACCACCACAAATGTACAAACCTAGTTTGGTTGAAGCTTTCAGGGATTTTCCTACATCTTCTTTGGGTCTTTTGAGCACTCTTCTTGCTCTAGACCCTTCATATCGTGGTTCGGCACGTTCTGCTCTTCAGAATGAATTCTTTCACACATGGCCGTTGGCGTGTGACCTTACAGGTCTACCTGTAATTTACAAAGAGGATGATGAGGCAACTCAAGCCAGAGAGCACAGAAAGTAA 1299 0.4488 MGSVQAKSSMNSPPRGLEKLKIDNGYVSKAAGRRSTGQRYPDKDSGRVLRPESGSNKVLFVSGDGGGEEKSINKEEKRDDGGSEVSHVKGKEIVDGWPNWLTDNIPKKALAGLVPRSAESFEKLDKIGQGTYSNVYKARDKDTGKIVALKKVRFETTEPESVKFMAREITILRELDHPNVIKLEGLVTSRMQYSLYLVFDFMQSDLARVIACPERLTEPQIKCYMHQLLSGLQHCHERGILHRDIKGSNLLIDKDGRLKIADFGLAKHFYPNRKHPLTSKVVTLWYRAPELLLGATDYGVGIDLWSAGCLLAEMFLGRPIMPGRTEVEQIHRIFKLCGTPSEEYWKKLRMPTTFRPPQMYKPSLVEAFRDFPTSSLGLLSTLLALDPSYRGSARSALQNEFFHTWPLACDLTGLPVIYKEDDEATQAREHRK* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1521 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Vvi18g1521 432 SUPERFAMILY Protein kinase-like (PK-like) 116 408 IPR011009 -
Vvi18g1521 432 MobiDBLite consensus disorder prediction 1 86 - -
Vvi18g1521 432 Pfam Protein kinase domain 121 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1521 432 Gene3D Phosphorylase Kinase; domain 1 110 203 - -
Vvi18g1521 432 MobiDBLite consensus disorder prediction 68 86 - -
Vvi18g1521 432 Gene3D Transferase(Phosphotransferase) domain 1 206 430 - -
Vvi18g1521 432 SMART serkin_6 121 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1521 432 ProSiteProfiles Protein kinase domain profile. 121 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1521 432 PANTHER CELL DIVISION PROTEIN KINASE 119 406 - -
Vvi18g1521 432 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Vvi18g1521 432 FunFam probable serine/threonine-protein kinase At1g54610 108 203 - -
Vvi18g1521 432 FunFam Putative serine/threonine-protein kinase 204 432 - -
Vvi18g1521 432 MobiDBLite consensus disorder prediction 36 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1521 Vvi-Chr18 19179444 19182071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1521 116 432 Core Cell Cycle Gene Families AT5G10270 46.726 3.09e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vvi18g1521 Pkinase 1.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1521 K08819 - vvi:100853757 869.766